Table 7 Counts of consequences of SNP for gene structure. Counts of consequences for gene structure of SNP within genes for each group of sequences

3 prime UTR variant

25,922

8709

8272

5 prime UTR variant

4773

1255

1259

Coding sequence variant

134

26

16

Downstream gene variant

100,961

32,248

27,382

Initiator codon variant

84

32

31

Intron variant

3,672,920

1,250,026

1,077,417

Mature miRNA variant

70

39

40

Missense variant

37,979

14,081

14,774

Non-coding transcript variant

6027

2258

1931

Non-coding exon variant

5749

2186

1872

Splice acceptor variant

252

97

195

Splice donor variant

251

92

144

Splice region variant

9735

3136

3120

Stop gained

401

196

403

Stop lost

23

8

16

Stop retained variant

37

8

11

Synonymous variant

53,102

16,231

12,837

Upstream gene variant

91,273

30,948

27,759