From: A clone-free, single molecule map of the domestic cow (Bos taurus) genome
Optical map contig name | Chr. assigned | Contig size (Mb) | Ave frag size (Kb) | # of fragments | Pooled SD | # of contiged_Rmaps | Coverage (X) | Chr. end |
---|---|---|---|---|---|---|---|---|
BtOMcontig_0 | chr1_OM | 140.22 | 10.06 | 13,939 | 1.44 | 30,977 | 86.44 | |
BtOMcontig_1 | chr2_OM | 130.23 | 9.14 | 14,255 | 1.38 | 25,002 | 74.86 | |
BtOMcontig_2 | chr6_OM | 118.45 | 9.95 | 11,903 | 1.43 | 31,660 | 104.35 | |
BtOMcontig_3 | chr4_OM | 116.61 | 9.48 | 12,301 | 1.43 | 25,518 | 85.52 | |
BtOMcontig_4 | chr11_OM | 106.25 | 8.62 | 12,319 | 1.34 | 21,601 | 79.32 | |
BtOMcontig_5 | chr3_OM | 93.84 | 8.99 | 10,443 | 1.38 | 19,179 | 79.65 | |
BtOMcontig_6 | chr7_OM | 87.27 | 9.68 | 9,015 | 1.43 | 20,409 | 91.23 | Rend |
BtOMcontig_7 | chr9_OM | 84.26 | 10.48 | 8,036 | 1.47 | 21,152 | 98.28 | |
BtOMcontig_8 | chr14_OM | 79.81 | 9.30 | 8,580 | 1.37 | 19,868 | 96.42 | Rend |
BtOMcontig_9 | chr10_OM | 78.66 | 9.16 | 8,584 | 1.37 | 16,881 | 83.57 | |
BtOMcontig_10 | chr5_OM | 72.42 | 9.55 | 7,580 | 1.42 | 16,341 | 87.99 | |
BtOMcontig_11 | chr20_OM | 70.31 | 9.25 | 7,598 | 1.38 | 16,064 | 88.57 | Rend |
BtOMcontig_12 | chr17_OM | 69.22 | 8.87 | 7,802 | 1.38 | 15,249 | 85.40 | |
BtOMcontig_13 | chr12_OM | 68.49 | 10.06 | 6,806 | 1.44 | 17,380 | 99.26 | |
BtOMcontig_14 | chr8_OM | 67.78 | 9.44 | 7,180 | 1.38 | 16,346 | 93.45 | |
BtOMcontig_15 | chr24_OM | 61.70 | 8.83 | 6,985 | 1.34 | 13,714 | 85.83 | |
BtOMcontig_16 | chr23_OM | 51.93 | 8.12 | 6,397 | 1.27 | 11,238 | 83.85 | Rend |
BtOMcontig_17 | chr21_OM | 48.96 | 8.42 | 5,814 | 1.32 | 10,942 | 86.52 | |
BtOMcontig_18 | chrX_OM | 48.92 | 9.31 | 5,252 | 1.39 | 12,327 | 97.76 | |
BtOMcontig_19 | chr22_OM | 48.65 | 8.60 | 5,658 | 1.31 | 11,716 | 92.87 | |
BtOMcontig_20 | chr26_OM | 48.38 | 8.52 | 5,679 | 1.33 | 9,439 | 75.22 | |
BtOMcontig_21 | chr27_OM | 45.27 | 8.75 | 5,172 | 1.33 | 9,906 | 84.89 | Lend |
BtOMcontig_22 | chr28_OM | 42.83 | 8.66 | 4,948 | 1.32 | 8,814 | 79.69 | |
BtOMcontig_23 | chr13_OM | 42.25 | 7.24 | 5,838 | 1.19 | 7,245 | 65.93 | Rend |
BtOMcontig_24 | chr8_OM | 41.52 | 8.52 | 4,873 | 1.31 | 8,742 | 81.62 | Rend |
BtOMcontig_25 | chr15_OM | 41.17 | 8.51 | 4,838 | 1.16 | 12,747 | 120.55 | |
BtOMcontig_26 | chr13_OM | 40.80 | 8.65 | 4,716 | 1.31 | 10,335 | 98.34 | |
BtOMcontig_27 | chr16_OM | 40.45 | 9.14 | 4,426 | 1.38 | 9,294 | 89.46 | |
BtOMcontig_28 | chr29_OM | 38.81 | 8.50 | 4,564 | 1.20 | 8,285 | 82.48 | |
BtOMcontig_29 | chr18_OM | 37.17 | 7.77 | 4,784 | 1.25 | 6,532 | 67.64 | |
BtOMcontig_30 | chr25_OM | 35.31 | 7.07 | 4,994 | 1.16 | 5,605 | 60.68 | |
BtOMcontig_31 | chr15_OM | 33.58 | 9.29 | 3,615 | 1.38 | 7,351 | 85.37 | |
BtOMcontig_32 | chrX_OM | 31.48 | 10.26 | 3,068 | 1.47 | 8,223 | 101.92 | |
BtOMcontig_33 | chr5_OM | 30.96 | 9.21 | 3,361 | 1.39 | 6,918 | 87.43 | |
BtOMcontig_34 | chr16_OM | 26.17 | 8.47 | 3,089 | 1.29 | 5,361 | 79.51 | Rend |
BtOMcontig_35 | chr19_OM | 24.87 | 7.02 | 3,543 | 1.18 | 4,275 | 65.31 | |
BtOMcontig_36 | chr10_OM | 22.97 | 8.23 | 2,791 | 1.28 | 4,012 | 67.92 | |
BtOMcontig_37 | chr21_OM | 20.02 | 8.91 | 2,247 | 1.33 | 4,576 | 88.83 | |
BtOMcontig_38 | chrX_OM | 18.25 | 9.23 | 1,978 | 1.39 | 3,883 | 82.28 | |
BtOMcontig_39 | chrX_OM | 17.09 | 9.89 | 1,728 | 1.31 | 4,286 | 98.13 | Lend |
BtOMcontig_40 | chr9_OM | 17.02 | 8.49 | 2,004 | 1.29 | 3,479 | 79.17 | Rend |
BtOMcontig_41 | chr19_OM | 16.07 | 8.79 | 1,827 | 1.33 | 3,955 | 95.33 | |
BtOMcontig_42 | chr12_OM | 14.86 | 8.79 | 1,690 | 1.27 | 3,990 | 104.20 | Rend |
BtOMcontig_43 | chr7_OM | 14.62 | 6.60 | 2,214 | 1.16 | 2,335 | 61.06 | |
BtOMcontig_44 | chr3_OM | 13.22 | 7.30 | 1,812 | 1.14 | 2,100 | 61.76 | |
BtOMcontig_45 | chr29_OM | 12.61 | 6.83 | 1,845 | 1.06 | 1,845 | 55.85 | Rend |
BtOMcontig_46 | chr1_OM | 12.49 | 8.23 | 1,518 | 1.28 | 2,545 | 79.47 | Rend |
BtOMcontig_47 | chrX_OM | 12.13 | 8.23 | 1,474 | 1.27 | 2,933 | 93.12 | Rend |
BtOMcontig_48 | chr18_OM | 11.51 | 7.94 | 1,450 | 1.23 | 2,317 | 77.67 | |
BtOMcontig_49 | chr5_OM | 10.61 | 7.02 | 1,511 | 1.15 | 1,527 | 55.98 | Rend |
BtOMcontig_50 | chr22_OM | 10.42 | 7.10 | 1,467 | 1.20 | 2,247 | 82.47 | Rend |
BtOMcontig_51 | chrX_OM | 9.25 | 9.92 | 933 | 1.35 | 1,879 | 79.61 | |
BtOMcontig_52 | chr19_OM | 8.80 | 6.81 | 1,292 | 1.14 | 1,385 | 60.46 | |
BtOMcontig_53 | chr3_OM | 8.48 | 8.67 | 978 | 1.25 | 1,625 | 74.62 | |
BtOMcontig_54 | chr25_OM | 7.44 | 7.33 | 1,015 | 1.23 | 1,260 | 65.72 | |
BtOMcontig_55 | chr15_OM | 7.05 | 8.17 | 863 | 1.21 | 1,405 | 76.14 | Rend |
BtOMcontig_56 | chr16_OM | 6.81 | 8.19 | 832 | 1.26 | 1,304 | 74.28 | |
BtOMcontig_57 | chr19_OM | 6.62 | 7.18 | 922 | 1.18 | 1,280 | 75.50 | Rend |
BtOMcontig_58 | chrX_OM | 5.20 | 8.20 | 634 | 1.36 | 1,403 | 101.81 | |
BtOMcontig_59 | chr7_OM | 5.14 | 7.13 | 721 | 1.06 | 767 | 57.86 | |
BtOMcontig_60 | chr16_OM | 4.11 | 7.18 | 573 | 1.18 | 677 | 62.75 | |
BtOMcontig_61 | chrX_OM | 4.07 | 9.14 | 445 | 1.33 | 1,085 | 102.82 | |
BtOMcontig_62 | chrX_OM | 3.61 | 8.68 | 416 | 1.39 | 667 | 71.57 | |
BtOMcontig_63 | chrX_OM | 3.51 | 8.70 | 404 | 1.33 | 751 | 81.90 | |
BtOMcontig_64 | chr19_OM | 3.19 | 6.20 | 514 | 1.08 | 367 | 43.19 | |
BtOMcontig_65 | chr5_OM | 3.10 | 7.01 | 442 | 1.18 | 456 | 55.52 | |
BtOMcontig_66 | chr28_OM | 3.01 | 9.48 | 318 | 1.20 | 522 | 68.20 | |
BtOMcontig_67 | chr17_OM | 2.46 | 6.79 | 363 | 1.19 | 369 | 58.72 | Rend |
BtOMcontig_68 | chr19_OM | 2.39 | 6.75 | 354 | 1.11 | 359 | 57.08 | |
BtOMcontig_69 | chr18_OM | 2.37 | 6.96 | 341 | 1.13 | 367 | 59.18 | Rend |
BtOMcontig_70 | chrX_OM | 2.34 | 12.14 | 193 | 1.44 | 439 | 73.01 | |
BtOMcontig_71 | chr18_OM | 1.71 | 6.14 | 278 | 1.03 | 192 | 43.46 | |
BtOMcontig_72 | chr14_OM | 1.48 | 8.95 | 165 | 1.22 | 150 | 38.00 | |
BtOMcontig_73 | chr16_OM | 1.04 | 7.06 | 148 | 1.19 | 90 | 32.43 | |
BtOMcontig_74 | chr18_OM | 0.95 | 6.39 | 148 | 1.11 | 110 | 43.36 | |
BtOMcontig_75 | chr14_OM | 0.84 | 7.09 | 119 | 1.19 | 100 | 46.05 | |
BtOMcontig_76 | chr18_OM | 0.75 | 6.08 | 124 | 1.10 | 90 | 45.00 | |
BtOMcontig_77 | chr18_OM | 0.66 | 6.00 | 110 | 1.04 | 121 | 67.59 | |
Total/Ave. | 2,575.30 | 8.91 | 289,156 | 1.28 | 567,886 | 77.00 |