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Table 1 BtOM1.0 contigs and their chromosome assignments

From: A clone-free, single molecule map of the domestic cow (Bos taurus) genome

Optical map contig name

Chr. assigned

Contig size (Mb)

Ave frag size (Kb)

# of fragments

Pooled SD

# of contiged_Rmaps

Coverage (X)

Chr. end

BtOMcontig_0

chr1_OM

140.22

10.06

13,939

1.44

30,977

86.44

 

BtOMcontig_1

chr2_OM

130.23

9.14

14,255

1.38

25,002

74.86

 

BtOMcontig_2

chr6_OM

118.45

9.95

11,903

1.43

31,660

104.35

 

BtOMcontig_3

chr4_OM

116.61

9.48

12,301

1.43

25,518

85.52

 

BtOMcontig_4

chr11_OM

106.25

8.62

12,319

1.34

21,601

79.32

 

BtOMcontig_5

chr3_OM

93.84

8.99

10,443

1.38

19,179

79.65

 

BtOMcontig_6

chr7_OM

87.27

9.68

9,015

1.43

20,409

91.23

Rend

BtOMcontig_7

chr9_OM

84.26

10.48

8,036

1.47

21,152

98.28

 

BtOMcontig_8

chr14_OM

79.81

9.30

8,580

1.37

19,868

96.42

Rend

BtOMcontig_9

chr10_OM

78.66

9.16

8,584

1.37

16,881

83.57

 

BtOMcontig_10

chr5_OM

72.42

9.55

7,580

1.42

16,341

87.99

 

BtOMcontig_11

chr20_OM

70.31

9.25

7,598

1.38

16,064

88.57

Rend

BtOMcontig_12

chr17_OM

69.22

8.87

7,802

1.38

15,249

85.40

 

BtOMcontig_13

chr12_OM

68.49

10.06

6,806

1.44

17,380

99.26

 

BtOMcontig_14

chr8_OM

67.78

9.44

7,180

1.38

16,346

93.45

 

BtOMcontig_15

chr24_OM

61.70

8.83

6,985

1.34

13,714

85.83

 

BtOMcontig_16

chr23_OM

51.93

8.12

6,397

1.27

11,238

83.85

Rend

BtOMcontig_17

chr21_OM

48.96

8.42

5,814

1.32

10,942

86.52

 

BtOMcontig_18

chrX_OM

48.92

9.31

5,252

1.39

12,327

97.76

 

BtOMcontig_19

chr22_OM

48.65

8.60

5,658

1.31

11,716

92.87

 

BtOMcontig_20

chr26_OM

48.38

8.52

5,679

1.33

9,439

75.22

 

BtOMcontig_21

chr27_OM

45.27

8.75

5,172

1.33

9,906

84.89

Lend

BtOMcontig_22

chr28_OM

42.83

8.66

4,948

1.32

8,814

79.69

 

BtOMcontig_23

chr13_OM

42.25

7.24

5,838

1.19

7,245

65.93

Rend

BtOMcontig_24

chr8_OM

41.52

8.52

4,873

1.31

8,742

81.62

Rend

BtOMcontig_25

chr15_OM

41.17

8.51

4,838

1.16

12,747

120.55

 

BtOMcontig_26

chr13_OM

40.80

8.65

4,716

1.31

10,335

98.34

 

BtOMcontig_27

chr16_OM

40.45

9.14

4,426

1.38

9,294

89.46

 

BtOMcontig_28

chr29_OM

38.81

8.50

4,564

1.20

8,285

82.48

 

BtOMcontig_29

chr18_OM

37.17

7.77

4,784

1.25

6,532

67.64

 

BtOMcontig_30

chr25_OM

35.31

7.07

4,994

1.16

5,605

60.68

 

BtOMcontig_31

chr15_OM

33.58

9.29

3,615

1.38

7,351

85.37

 

BtOMcontig_32

chrX_OM

31.48

10.26

3,068

1.47

8,223

101.92

 

BtOMcontig_33

chr5_OM

30.96

9.21

3,361

1.39

6,918

87.43

 

BtOMcontig_34

chr16_OM

26.17

8.47

3,089

1.29

5,361

79.51

Rend

BtOMcontig_35

chr19_OM

24.87

7.02

3,543

1.18

4,275

65.31

 

BtOMcontig_36

chr10_OM

22.97

8.23

2,791

1.28

4,012

67.92

 

BtOMcontig_37

chr21_OM

20.02

8.91

2,247

1.33

4,576

88.83

 

BtOMcontig_38

chrX_OM

18.25

9.23

1,978

1.39

3,883

82.28

 

BtOMcontig_39

chrX_OM

17.09

9.89

1,728

1.31

4,286

98.13

Lend

BtOMcontig_40

chr9_OM

17.02

8.49

2,004

1.29

3,479

79.17

Rend

BtOMcontig_41

chr19_OM

16.07

8.79

1,827

1.33

3,955

95.33

 

BtOMcontig_42

chr12_OM

14.86

8.79

1,690

1.27

3,990

104.20

Rend

BtOMcontig_43

chr7_OM

14.62

6.60

2,214

1.16

2,335

61.06

 

BtOMcontig_44

chr3_OM

13.22

7.30

1,812

1.14

2,100

61.76

 

BtOMcontig_45

chr29_OM

12.61

6.83

1,845

1.06

1,845

55.85

Rend

BtOMcontig_46

chr1_OM

12.49

8.23

1,518

1.28

2,545

79.47

Rend

BtOMcontig_47

chrX_OM

12.13

8.23

1,474

1.27

2,933

93.12

Rend

BtOMcontig_48

chr18_OM

11.51

7.94

1,450

1.23

2,317

77.67

 

BtOMcontig_49

chr5_OM

10.61

7.02

1,511

1.15

1,527

55.98

Rend

BtOMcontig_50

chr22_OM

10.42

7.10

1,467

1.20

2,247

82.47

Rend

BtOMcontig_51

chrX_OM

9.25

9.92

933

1.35

1,879

79.61

 

BtOMcontig_52

chr19_OM

8.80

6.81

1,292

1.14

1,385

60.46

 

BtOMcontig_53

chr3_OM

8.48

8.67

978

1.25

1,625

74.62

 

BtOMcontig_54

chr25_OM

7.44

7.33

1,015

1.23

1,260

65.72

 

BtOMcontig_55

chr15_OM

7.05

8.17

863

1.21

1,405

76.14

Rend

BtOMcontig_56

chr16_OM

6.81

8.19

832

1.26

1,304

74.28

 

BtOMcontig_57

chr19_OM

6.62

7.18

922

1.18

1,280

75.50

Rend

BtOMcontig_58

chrX_OM

5.20

8.20

634

1.36

1,403

101.81

 

BtOMcontig_59

chr7_OM

5.14

7.13

721

1.06

767

57.86

 

BtOMcontig_60

chr16_OM

4.11

7.18

573

1.18

677

62.75

 

BtOMcontig_61

chrX_OM

4.07

9.14

445

1.33

1,085

102.82

 

BtOMcontig_62

chrX_OM

3.61

8.68

416

1.39

667

71.57

 

BtOMcontig_63

chrX_OM

3.51

8.70

404

1.33

751

81.90

 

BtOMcontig_64

chr19_OM

3.19

6.20

514

1.08

367

43.19

 

BtOMcontig_65

chr5_OM

3.10

7.01

442

1.18

456

55.52

 

BtOMcontig_66

chr28_OM

3.01

9.48

318

1.20

522

68.20

 

BtOMcontig_67

chr17_OM

2.46

6.79

363

1.19

369

58.72

Rend

BtOMcontig_68

chr19_OM

2.39

6.75

354

1.11

359

57.08

 

BtOMcontig_69

chr18_OM

2.37

6.96

341

1.13

367

59.18

Rend

BtOMcontig_70

chrX_OM

2.34

12.14

193

1.44

439

73.01

 

BtOMcontig_71

chr18_OM

1.71

6.14

278

1.03

192

43.46

 

BtOMcontig_72

chr14_OM

1.48

8.95

165

1.22

150

38.00

 

BtOMcontig_73

chr16_OM

1.04

7.06

148

1.19

90

32.43

 

BtOMcontig_74

chr18_OM

0.95

6.39

148

1.11

110

43.36

 

BtOMcontig_75

chr14_OM

0.84

7.09

119

1.19

100

46.05

 

BtOMcontig_76

chr18_OM

0.75

6.08

124

1.10

90

45.00

 

BtOMcontig_77

chr18_OM

0.66

6.00

110

1.04

121

67.59

 

Total/Ave.

 

2,575.30

8.91

289,156

1.28

567,886

77.00

 
  1. Note, Abbreviations: chr. = chromosome, PooledSD = Pooled standard deviation, AveFragSize = Average Fragment Size, and Ave. = average, Chr.end = chromosome end or telomere, Rend = right hand side of the contig is telomere, Lend = left hand side of the contig is telomere