Table 1 Statistics for different annotations for H. utahensis genome along with the extended annotations. For orphan and functional genes we show the actual number of genes and the percentage relative to the total number of annotated genes
From: BEACON: automated tool for Bacterial GEnome Annotation ComparisON
Annotation features | NCBI | AAMG | RAST | Extended annotations | |||||
|---|---|---|---|---|---|---|---|---|---|
Original | Complemented by annotation of function from AAMG and RAST | Original | Complemented by annotation of function from NCBI and RAST | Original | Complemented by annotation of function from NCBI and AAMG | EA | Unique | EUA | |
CDS | 2998 | 2998 | 3040 | 3040 | 3041 | 3041 | 2980 | 698 | 3678 |
rRNA | 4 | 4 | 3 | 3 | 3 | 3 | 4 | 0 | 4 |
tRNA | 45 | 45 | 45 | 45 | 45 | 45 | 45 | 0 | 45 |
ncRNA | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
frameshift/Pseudo | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Total | 3048 | 3048 | 3088 | 3088 | 3089 | 3089 | 3029 | 699 | 3728 |
Orphan genes | 1014 (33.27 %) | 777 (25.49 %) | 885 (28.66 %) | 837 (27.10 %) | 1203 (38.94 %) | 819 (26.51 %) | 672 (22.19 %) | 399 (57.08 %) | 1071 (28.73 %) |
Functional genes | 2034 (66.73 %) | 2271 (74.51 %) | 2203 (71.34 %) | 2251 (72.90 %) | 1886 (61.06 %) | 2270 (73.49 %) | 2357 (77.81 %) | 300 (42.92 %) | 2657 (71.27 %) |