Table 2 AAMG and RAST annotations compared to the NCBI annotation that is taken as the reference. False Negatives (FN) are genes that exist in the NCBI annotation but are not predicted by an AM. False Positives (FP) are genes predicted by an AM but not present in the NCBI annotation
From: BEACON: automated tool for Bacterial GEnome Annotation ComparisON
Gene calls | Genes annotated by RAST | % of NCBI genes | Genes annotated by AAMG | % of NCBI genes |
|---|---|---|---|---|
Detected identical | 2421 (CDS = 2376 rRNA = 0 tRAN = 45 ncRAN = 0) | 79.43 % | 2780 (CDS = 2732 rRNA = 3 tRAN = 45 ncRAN = 0) | 91.21 % |
Detected similar | 126 (CDS = 123 rRNA = 3 tRAN = 0 ncRAN = 0) | 4.13 % | 71 (CDS = 71 rRNA = 0 tRAN = 0 ncRAN = 0) | 2.33 % |
FN - Short overlap | 74 | 2.43 % | 32 | 1.05 % |
FN - No overlap | 427 | 14.01 % | 165 | 5.41 % |
FP - Short overlap | 13 | - | 0 | - |
FP-No overlap | 529 | - | 237 | - |
Similarity score | 83.00 % | 92.93 % |