Library | Total number of sequenced reads | Total usable reads equal to or longer than 17Â nt | Total reads mapped | Number of unique sequences | Number of unique sequences mapping to at least one and up to 4 locations in the genome | Unique sequences matching an Rfam model (non-coding RNA) |
---|---|---|---|---|---|---|
Eggs (rep1) | 661,329 | 649,691 | 153,904 | 168,959 | 46,142 (27.31Â %) | 3,471 (2.05Â %) |
Eggs (rep2) | 1,783,633 | 1,755,385 | 391,420 | 415,781 | 114,655 (27.58Â %) | 6,723 (1.61Â %) |
Eggs (rep3) | 1,511,629 | 1,495,468 | 274,923 | 339,551 | 97,218 (28.63Â %) | 5,117 (1.51Â %) |
Larvae (rep1) | 990,551 | 901,206 | 181,715 | 199,654 | 55,738 (27.92Â % | 5,156 (2.58Â %) |
Larvae (rep2) | 1,382,185 | 1,286,889 | 181,896 | 303,152 | 71,141 (23.47Â %) | 4,645 (1.53Â %) |
Larvae (rep3) | 730,458 | 697,460 | 102,637 | 172,540 | 41,204 (23.88Â %) | 3,452 (2.00Â %) |
Male Pupae (rep1) | 1,659,261 | 1,502,737 | 237,960 | 258,875 | 39,084 (15.10Â %) | 4,298 (1.66Â %) |
Male Pupae (rep2) | 1,175,996 | 1,070,491 | 112,938 | 164,853 | 23,601 (14.32Â %) | 2,988 (1.81Â %) |
Male Pupae (rep3) | 1,253,417 | 1,206,485 | 178,091 | 176,704 | 25,543 (14.46Â %) | 3,472 (1.96Â %) |
Female Pupae (rep1) | 1,086,136 | 1,017,418 | 115,176 | 174,118 | 19,855 (11.40Â %) | 2,501 (1.43Â %) |
Female Pupae (rep2) | -- | -- | -- | -- | -- | -- |
Female Pupae (rep3) | 1,169,052 | 1,096,264 | 169,583 | 153,575 | 23,841 (15.52Â %) | 3,239 (2.1Â %) |
Ovaries (rep1) | 79,391 | 73,001 | 10,453 | 18,251 | 3,270 (17.92Â %) | 598 (3.27Â %) |
Ovaries (rep2) | 1,154,349 | 1,134,024 | 229,095 | 398,853 | 111,069 (27.85Â % | 6,114 (1.53Â %) |
Ovaries (rep3) | 1,740,634 | 1,710,835 | 358,303 | 523,507 | 145,910 (27.87Â %) | 8,025 (1.53Â %) |
TOTAL | 16,378,021 | 15,597,354 | Â | Â | 818,271 | 59,799 |
(23.60Â % of unique reads) | (27Â % of unique reads) |