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Table 2 Properties of the hitherto sequenced Campylobacter group II phages

From: Campylobacter group II phage CP21 is the prototype of a new subgroup revealing a distinct modular genome organization and host specificity

 

CP21

CP220

CPt10

IBB_35a

Family

Myoviridae

Myoviridae

Myoviridae

Myoviridae

 Head diameter (nm)

93

96

n.a.

100

 Tail dimensions (nm)

135 × 24

110 × 16

n.a.

140 × 17

Host species

C. jejuni, C. coli

C. jejuni, C. coli

C. jejuni, C. coli

C. jejuni, C. coli

Genome size according to PFGE (kb)

209

197

176

204

Genomic sequence (bp)

182,761

177,493

175,720

172,065

G + C content (%)

27.2

27.4

27.3

27.4

Total no. of ORFs

220

194

201

210

 Forward strand

91

173

180

n.a.b

 Reverse strand

129

21

21

n.a.b

Coding density (%)

88.2

88.4

89.7

90.0

Gps with predicted function

78 (35 %)

74 (38 %)

70 (35 %)

84 (40 %)

Transcription terminators

13

11

9

14

tRNAs

2 (Thr, Pro)

2 (Arg, Tyr)

2 (Arg, Tyr)

2 (Arg, Tyr)

Homing endonucleases

3

1

1

3

Transposases

5

4

2

2

T4-related proteins

32

39

34

35

SAM-related proteins

8

11

12

6

Genome structure

Linear

Linear

Linear

n.a.

Sequence state

Complete

Complete

Complete

Incompletea

Accession number

NC019507.1

FN667788

FN667789

C1:HM246720

C2:HM246721

C3:HM246722

C4:HM246723

C5:HM246724

Reference

[23]

[11]

[11]

[22]

  1. SAM S-Adenosyl-L-Methionine, ORF Open Reading Frame, PFGE Pulsed-Field Gel Electrophoresis, n.a. not available, gps gene products
  2. aThe genome characteristics of IBB_35 base on five annotated contigs
  3. bAccording to the suggested arrangement of the five contigs, the majority of ORFs (68 %) are located on the forward strand [22]