Table 1 Overview of the sequencing and assembly
| Â | W | R | All |
|---|---|---|---|
Total raw reads | 59,986,374 | 59,690,570 | Â |
Total clean reads | 52,413,112 | 53,352,808 | Â |
Total clean nucleotides (bp) | 4,717,180,080 | 4,801,752,720 | Â |
Q20 percentage | 97.86Â % | 97.93Â % | Â |
GC percentage | 46.93Â % | 47.24Â % | Â |
Step-wise assembly | Â | Â | Â |
Contig | Â | Â | Â |
Total number of contigs | 105,377 | 114,265 | Â |
Length of all contig (bp) | 37,852,028 | 41,902,139 | Â |
Average length of contigs (bp) | 359 | 367 | Â |
Contig N50 (bp) | 739 | 783 | Â |
Unigene | Â | Â | Â |
Total number of unigenes | 69,540 | 66,917 | 57,331 |
Length of all unigene (bp) | 35,488,277 | 39,943,235 | 42,391,141 |
Average length of unigenes (bp) | 510 | 597 | 739 |
Unigene N50 (bp) | 763 | 1,020 | 1,209 |