Transcriptional analysis of phloem-associated cells of potato

Lin, Tian; Lashbrook, Coralie C.; Cho, Sung Ki; Butler, Nathaniel M.; Sharma, Pooja; Muppirala, Usha; Severin, Andrew J.; Hannapel, David J.

doi:10.1186/s12864-015-1844-2

BMC Genomics

Table 5 Abundance of RNA-binding proteins in phloem-associated cells

From: Transcriptional analysis of phloem-associated cells of potato

Gene	Gene ID	Petiole phloem	Stem phloem	Identified in	Citation
StPTBl	PGSC0003DMG400018824	234	373	Ortholog of CmRBP50	Ham et al., [20]; Butler et al. [35]
StPTB6	PGSC0003DMG400023660	79	567	Ortholog of CmRBP50	Ham et al., [20]; Butler et al., [35]
StPTB7	PGSC0003DMG400001427	140	188	In potato PTB family	Rühl et al., [57]
StPTB7-l	PGSC0003DMG400009106	28	43	In potato PTB family	Rühl et al., [57]
StPTB7-2	PGSC0003DMG400002353	18	16	In potato PTB family	Rühl et al., [57]
StPTB7-3	PGSC0003DMG400019613	101	391	In potato PTB family	Rühl et al., [57]
RBP1	PGSC0003DMG402017409	652	1005	pumpkin phloem proteome	Lin et al., [2]
GRP7	PGSC0003DMG400000708	99,744	161,520	pumpkin phloem proteome	Lin et al., [2]
RBP-45	PGSC0003DMG400011290	1217	724	pumpkin phloem proteome	Lin et al., [2]
RBP6	PGSC0003DMG400012601	2747	2147	pumpkin phloem proteome	Lin et al., [2]
Albal	PGSC0003DMG400020480	1	64	pumpkin phloem proteome	Lin et al., [2]
Alba2	PGSC0003DMG400020460	0	43	pumpkin phloem proteome	Lin et al., [2]
Pumiliol	PGSC0003DMG400002143	4748	5411	Leaf development	Huang et al., [61]
Pumilio2	PGSC0003DMG400006350	344	669	Potato PAC	Abbasi et al., [59]
Pumilio3	PGSC0003D MG400009166	834	343	Potato PAC	Abbasi et al., [59]
Pumilio4	PGSC0003DMG400030327	751	1109	Potato PAC	Abbasi et al., [59]
IF2 (Nova)	PGSC0003DMG400023482	227	329	pumpkin phloem Y2H with PTB1 and PTB6	Lin et al., [2]; Shah et al., [56]
IF1 (RRM protein)	PGSC0003DMG400008877	600	1353	Y2H with PTB1 and PTB6	Shah et al., [56]
Sucrose svnthase-4	PGSC0003DMG400013546	4219	7886	Y3H with StBEL5 3′ UTR	Cho et al., [58]
GR-RBP3	PGSC0003DMG400028111	345	355	Y3H with StBEL5 3′ UTR	Cho et al., [58]
LSH10	PGSC0003DMG400020442	44	22	Y3H with StBEL5 3′ UTR	Cho et al., [58]
elF5A	PGSC0003DMG400011137	1077	1216	Y3H with StBEL5 3′ UTR	Cho et al., [58]
B5RBP5	PGSC0003DMG400031406	352	527	Y3H with StBEL5 3′ UTR	Cho et al., [58]
Zinc finger	PGSC0003D MG400027176	4424	1879	Y3H with StBEL5 3′ UTR	Cho et al., [58]
B5RBP7	PGSC0003DMG400017156	4323	5245	Y3H with StBEL5 3′ UTR	Cho et al., [58]

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com