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Fig. 3 | BMC Genomics

Fig. 3

From: Skipper genome sheds light on unique phenotypic traits and phylogeny

Fig. 3

Analysis of SNPs in the Lac and Pgl genomes. a Histograms of 17-mer frequency in the sequence reads of Lac (blue) and Pgl (red). For both species, the peak on the left represents frequency distribution of 17-mers from heterozygous regions and the peak on the right is for homozygous regions. The relative heights of the two peaks is an indicator for heterozygosity level. b Histogram of SNP rates in 1000 bp overlapping windows from different regions in the Pgl genome. c Histogram of SNP rates in 1000 bp overlapping windows from different regions in the Lac genome. d Venn diagram showing the large overlap between enriched GO terms associated with mutation-enriched proteins in both Lac and Pgl genomes. e Enriched GO terms (in the category of biological processes) associated substitution-enriched proteins in both Pgl and Lac. GO terms are grouped in space by similarity in meaning and colored by the level of significance (scale shown in the upper left corner), which is a product of p-values for this GO term’s enrichment in Pgl and Lac genomes. Annotations are shown for the representative GO-terms for groups of similar terms. f Similar to (e), but these GO terms belong to the category of molecular function

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