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Table 1 Quality and composition of Lepidoptera genomes

From: Skipper genome sheds light on unique phenotypic traits and phylogeny

Feature Lac Pgl Dpl Hme Mci Bmo Pxy
Genome size (Mb) 310 376 249 274 390 480 394
Genome size without gap (Mb) 292 362 242 270 361 432 387
Heterozygosity (%) 1.6 2.3 0.55 n.a. n.a. n.a. ~2
Scaffold N50 (kb) 513 230 716 194 119 3999 737
CEGMA (%) 99.3 99.3 99.3 98.0 98.7 99.3 98.0
Average CEGMA coverage by single scaffold (%) 86.6 86.8 87.3 86.4 79.1 86.7 84.0
Cytoplasmic Ribosomal Proteins (%) 98.9 98.9 98.9 94.6 94.6 97.8 93.5
De novo assembled transcripts (%) 97 ~ 99 98 96 n.a. ~97 98 83
GC content (%) 34.4 35.4 31.6 32.8 32.6 37.7 38.3
Repeat (%) 15.5 22.0 16.3 24.9 28.0 44.1 34.0
Exon (%) 6.96 5.07 8.40 6.38 6.36 4.03 6.35
Intron (%) 31.6 25.6 28.1 25.4 30.7 15.9 30.7
Number of proteins (thousands) 17.4 15.7 15.1 12.8 16.7 14.3 18.1
Number of universal ortholog lost 153 114 47 354 521 394 1188
Number of species specific genes 4586 3172 2361 1526 4691 2486 5260
  1. n.a. Data not available