Table 1 Quality and composition of Lepidoptera genomes
From: Skipper genome sheds light on unique phenotypic traits and phylogeny
Feature | Lac | Pgl | Dpl | Hme | Mci | Bmo | Pxy |
|---|---|---|---|---|---|---|---|
Genome size (Mb) | 310 | 376 | 249 | 274 | 390 | 480 | 394 |
Genome size without gap (Mb) | 292 | 362 | 242 | 270 | 361 | 432 | 387 |
Heterozygosity (%) | 1.6 | 2.3 | 0.55 | n.a. | n.a. | n.a. | ~2 |
Scaffold N50 (kb) | 513 | 230 | 716 | 194 | 119 | 3999 | 737 |
CEGMA (%) | 99.3 | 99.3 | 99.3 | 98.0 | 98.7 | 99.3 | 98.0 |
Average CEGMA coverage by single scaffold (%) | 86.6 | 86.8 | 87.3 | 86.4 | 79.1 | 86.7 | 84.0 |
Cytoplasmic Ribosomal Proteins (%) | 98.9 | 98.9 | 98.9 | 94.6 | 94.6 | 97.8 | 93.5 |
De novo assembled transcripts (%) | 97 ~ 99 | 98 | 96 | n.a. | ~97 | 98 | 83 |
GC content (%) | 34.4 | 35.4 | 31.6 | 32.8 | 32.6 | 37.7 | 38.3 |
Repeat (%) | 15.5 | 22.0 | 16.3 | 24.9 | 28.0 | 44.1 | 34.0 |
Exon (%) | 6.96 | 5.07 | 8.40 | 6.38 | 6.36 | 4.03 | 6.35 |
Intron (%) | 31.6 | 25.6 | 28.1 | 25.4 | 30.7 | 15.9 | 30.7 |
Number of proteins (thousands) | 17.4 | 15.7 | 15.1 | 12.8 | 16.7 | 14.3 | 18.1 |
Number of universal ortholog lost | 153 | 114 | 47 | 354 | 521 | 394 | 1188 |
Number of species specific genes | 4586 | 3172 | 2361 | 1526 | 4691 | 2486 | 5260 |