The isolation and characterization of two Stenotrophomonas maltophilia bacteriophages capable of cross-taxonomic order infectivity

Peters, Danielle L.; Lynch, Karlene H.; Stothard, Paul; Dennis, Jonathan J.

doi:10.1186/s12864-015-1848-y

Table 4 Bacteriophage DLP2 genome annotation

From: The isolation and characterization of two Stenotrophomonas maltophilia bacteriophages capable of cross-taxonomic order infectivity

Gene	Start	End	Putative function	Strand	Length (AA)	Homologue	Percent identity	Source	GenBank accession number
1	1	255	Hypothetical protein	+	84	Phage protein found in lysis cassettes	96	PA25	YP_006299865.1
2	252	518	Holin	+	88	Holin	95	PA25	YP_006299866.1
3	511	1056	Endolysin	+	181	ORF003	100	PA73	YP_001293410.1
4	1068	1373	Rz	+	101	Rz	100	Ab26	YP_009044338.1
5	1288	1569	Rz1	+	93	Rz1	100	Ab26	YP_009044339.1
6	1627	2115	Small terminase	+	162	Small terminase	100	PA25	YP_006299870.1
7	2096	3691	Large terminase	+	531	Large terminase	99	Ab26	YP_009044341.1
8	3705	5210	Portal protein	+	501	Portal protein	99	Ab26	YP_009044342.1
9	5222	6316	F-like head morphogenesis protein	+	364	F-like head morphogenesis protein	99	Ab26	YP_009044343.1
10	6353	7072	Scaffold protein	+	239	Scaffold protein	98	PA25	YP_006299874.1
11	7075	8052	Major capsid protein	+	325	ORF010	99	PA73	YP_001293417.1
12	8122	8526	Hypothetical protein	+	134	ORF011	99	PA73	YP_001293418.1
13	8592	8963	Hypothetical protein	+	123	ORF012	98	PA73	YP_001293419.1
14	8976	9494	Hypothetical protein	+	172	Virion protein	100	PA25	YP_006299878.1
15	9498	9878	Head-tail joining protein	+	126	Virion protein	98	Ab26	YP_009044349.1
16	9875	10,330	Minor tail protein	+	151	ORF015	99	PA73	YP_001293422.1
17	10,343	11,878	Major tail tube protein	+	511	Major tail tube protein	99	PA25	YP_006299881.1
18	11,942	12,370	Tail chaperonin	+	142	Tail chaperonin	99	Ab26	YP_009044352.1
19	12,379	12,735	Tail chaperonin	+	114	Tail chaperonin	99	Ab26	YP_009044353.1
20	12,704	13,138	Hypothetical protein	+	144	ORF019	100	PA73	YP_001293426.1
21	13,144	16,711	Tape measure protein	+	1187	Tape measure protein	99	PA25	YP_006299885.1
22	16,709	17,671	Hypothetical protein	+	320	Virion protein	88	PA25	YP_006299886.1
23	17,671	18,636	Hypothetical protein	+	321	Virion protein	64	PA25	YP_006299887.1
24	18,642	20,354	Hypothetical protein	+	570	Virion protein	96	PA25	YP_006299888.1
25	20,354	21,178	Hypothetical protein	+	274	Virion protein	99	PA25	YP_006299889.1
26	21,182	23,623	Central tail hub	+	813	Central tail hub	99	PA25	YP_006299890.1
27	23,624	25,675	DNA polymerase	-	683	DNA polymerase	99	PA25	YP_006299891.1
28	25,687	26,829	Replicative clamp	-	380	Replicative clamp	97	PA25	YP_006299892.1
29	26,813	27,040	Hypothetical Protein	-	76	KAK25_00029	100	PA25	YP_006299893.1
30	27,045	28,700	DEAD box helicase	-	551	DEAD box helicase	99	Ab26	YP_009044363.1
31	28,693	29,790	RecB exonuclease	-	365	RecB exonuclease	99	Ab26	YP_009044364.1
32	29,959	30,120	Hypothetical protein	-	53	KAK25_00032	100	PA25	YP_006299896.1
33	30,302	31,054	Hypothetical protein	-	251	Member of DUF669 phage protein family	99	PA25	YP_006299897.1
34	31,113	31,829	Rec A	-	238	RecA	100	Ab26	YP_009044366.1
35	31,884	32,324	Hypothetical protein	-	146	Hypothetical protein	99	Ab26	YP_009044367.1
36	32,401	32,958	MazG	-	185	MazG	98	Ab26	YP_009044368.1
37	33,078	33,284	Transcriptional regulator	+	68	Hypothetical protein	99	Ab26	YP_009044369.1
38	33,274	35,595	Replicative Primase/Helicase	+	773	Replicative primase/helicase	99	PA25	YP_006299902.1
39	35,741	36,193	Hypothetical protein	+	150	MAM_066	54	ΦMAM1^a	YP_007349045.1
40	36,281	36,430	Hypothetical protein	+	49	KAK25_00040	69	PA25	YP_006299904.1
41	36,764	36,955	Hypothetical protein	+	63	ORF038	94	PA73	YP_001293445.1
42	36,952	37,248	Hypothetical protein	+	98	ORF039	100	PA73	YP_001293446.1
43	37,269	37,424	Hypothetical protein	+	59	Hypothetical protein	92	Ab26	YP_009044375.1
44	37,399	37,641	Hypothetical protein	+	80	ORF040	99	PA73	YP_001293447.1
45	37,748	37,945	Hypothetical protein	+	73	X805_23910	58	DSM 6575^b	KDB52021.1
46	37,993	38,367	Hypothetical protein	+	124	KAK25_00046	97	PA25	YP_006299910.1
47	38,428	38,649	Hypothetical protein	+	73	KAK25_00047	99	PA25	YP_006299911.1
48	38,646	39,182	Vsr endonuclease	+	178	KAK25_00048	100	PA25	YP_006299912.1
49	39,170	39,385	Hypothetical protein	+	71	Hypothetical protein	100	Ab26	YP_009044380.1
50	39,382	39,561	Hypothetical protein	+	59	KAK25_00050	98	PA25	YP_006299914.1
51	39,622	39,927	Hypothetical protein	+	101	ORF045	100	PA73	YP_001293452.1
52	39,944	40,234	Hypothetical protein	+	96	ORF046	99	PA73	YP_001293453.1
53	40,227	40,460	Hypothetical protein	+	77	KAK25_00053	99	PA25	YP_006299917.1
54	40,531	40,698	Hypothetical protein	+	55	ORF048	100	PA73	YP_001293455.1
55	40,689	41,156	dCMP deaminase	+	145	dCMP deaminase	97	PA25	YP_009044383.1
56	41,162	41,545	Hypothetical protein	+	127	ORF050	100	PA73	YP_001293457.1
57	41,580	41,789	Hypothetical protein	+	69	ORF051	100	PA73	YP_001293458.1
58	41,873	42,445	Hypothetical protein	+	190	ORF052	99	PA73	YP_001293459.1

^a Serratia phage ΦMAM1
^b Sphaerotilus natans subsp. natans DSM 6575

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ISSN: 1471-2164

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