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Fig. 3 | BMC Genomics

Fig. 3

From: Avian pathogenic Escherichia coli (APEC) infection alters bone marrow transcriptome in chickens

Fig. 3

Principal component analysis (PCA) of transcriptome of all 24 RNAseq libraries. Across the complete dataset, 20.46 % (3501/17108) genes were differentially expressed with the false discovery rate (FDR) < 0.05 and fold change > 1.5. Each point indicates one RNAseq library. The susceptible birds at the two time points clustered separately. The other four treatments, however, were clustered together. Abbreviations: D1_NC, day 1 non-challenged birds; D1_R, day 1 resistant birds; D1_S, day 1 susceptible birds; D5_NC, day 5 non-challenged birds; D5_R, day 5 resistant birds; D5_S, day 5 susceptible birds

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