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Table 1 Contigs regulated in AcH 505 inoculated plants which were not altered when subjected to co-inoculation with P. croceum in roots and leaves and during RF and SF

From: Large scale transcriptome analysis reveals interplay between development of forest trees and a beneficial mycorrhiza helper bacterium

 

Co-Ac

Co-PiAc

 

Contig

Log2 fold change

FDR

Log2 fold change

FDR

Sequence description

 

Root – RF

 

comp34428_c0_seq2

8,8

2,0E-07

7,7

1,3E-04

Ice binding

comp43120_c0_seq11

2,6

7,4E-07

2,2

6,6E-17

Xyloglucan endotransgl/hydrolase

comp36512_c0_seq1

5,9

1,1E-06

6,0

5,3E-08

Nucleolar complex protein

comp32163_c0_seq1

2,2

1,3E-05

2,9

8,3E-09

Clavaminate synthase

comp43753_c1_seq2

8,6

9,0E-05

8,6

3,9E-08

Kinase-like protein

comp39841_c1_seq1

1,1

6,0E-05

1,1

2,0E-06

Exordium-like protein

comp37819_c1_seq5

7,9

1,5E-03

8,5

3,6E-10

o-linked c transferase

comp43557_c1_seq2

8,4

7,0E-03

8,6

2,2E-10

tRNA-dihydrouridine synthase

 

Root – SF

 

comp29599_c0_seq1

−1,3

6,6E-19

−1,9

9,9E-03

Gibberellin-regulated protein

comp41819_c4_seq2

−8,5

1,3E-10

−8,7

4,5E-07

F-box family protein

comp43426_c1_seq15

−7,2

4,8E-07

−7,4

1,9E-04

Sugar transporter

comp37704_c0_seq2

−1,0

3,1E-04

−3,9

5,5E-44

PS II binding protein LHCB1.5

comp42662_c0_seq8

1,6

1,1E-99

1,1

3,1E-05

Cytochrome p450

comp19461_c0_seq1

1,2

7,0E-54

1,1

1,4E-04

Peroxidase 10

comp35114_c0_seq1

1,1

1,4E-45

1,4

5,4E-04

Zinc finger protein

comp19664_c0_seq1

0,8

2,2E-11

1,0

2,3E-03

Thaumatin

comp42100_c0_seq10

7,2

9,2E-06

6,9

7,8E-04

Chromatin binding

 

Leaf – RF

 

comp36279_c0_seq4

−9,0

1,1E-09

−8,9

1,9E-09

GTP cyclohydrolase

comp23339_c0_seq1

−1,5

1,6E-06

−1,8

7,6E-10

Phosphoglycerate dehydrogenase

comp40475_c2_seq3

−1,1

8,2E-04

−0,9

3,0E-03

Leucine-rich repeat receptor

comp28232_c0_seq1

2,3

4,6E-04

2,0

5,4E-04

Fasciclin-like arabinogalactan-protein

comp30075_c0_seq1

1,8

4,8E-03

2,2

1,4E-05

Lipid transfer protein

comp42008_c3_seq5

3,7

3,5E-06

3,1

2,4E-03

Calcium-binding protein

comp39615_c0_seq1

2,2

3,9E-06

1,8

9,3E-04

Multicopper oxidase

comp42669_c0_seq2

5,1

1,2E-05

3,8

6,2E-03

Cellulose synthase

comp42379_c0_seq7

4,3

9,0E-03

4,4

2,1E-03

Pho1-like protein

 

Leaf – SF

 

comp30731_c0_seq2

−0,7

1,9E-20

−0,9

1,3E-03

Cbl-interacting serine threonine-protein

comp30800_c0_seq1

−2,7

1,8E-06

−2,2

3,6E-03

Adenylyl-sulfate reductase

comp39235_c1_seq5

−6,7

1,8E-04

−6,7

5,8E-03

Chaperone protein

comp21202_c0_seq1

3,4

3,4E-85

1,4

1,7E-04

Anthocyanidin synthase

comp42008_c3_seq5

2,5

1,6E-41

2,6

6,0E-04

Calcium-binding protein

comp42290_c0_seq1

1,2

3,6E-27

1,8

9,2E-10

Lipoxygenase

comp42379_c0_seq7

8,6

5,4E-11

9,0

1,2E-03

Pho1-like protein

comp43826_c1_seq6

8,8

4,1E-10

7,9

1,1E-05

LRR-NB-ARC domain protein

  1. Significant differential expression was determined by edgeR with a threshold Benjamini-Hochberg adjusted p-value of 0.01, indicated by "FDR"
  2. Abbreviations: endotransgl, endotransglycosidase; PSII, photosystem II