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Table 1 Contigs regulated in AcH 505 inoculated plants which were not altered when subjected to co-inoculation with P. croceum in roots and leaves and during RF and SF

From: Large scale transcriptome analysis reveals interplay between development of forest trees and a beneficial mycorrhiza helper bacterium

  Co-Ac Co-PiAc  
Contig Log2 fold change FDR Log2 fold change FDR Sequence description
  Root – RF  
comp34428_c0_seq2 8,8 2,0E-07 7,7 1,3E-04 Ice binding
comp43120_c0_seq11 2,6 7,4E-07 2,2 6,6E-17 Xyloglucan endotransgl/hydrolase
comp36512_c0_seq1 5,9 1,1E-06 6,0 5,3E-08 Nucleolar complex protein
comp32163_c0_seq1 2,2 1,3E-05 2,9 8,3E-09 Clavaminate synthase
comp43753_c1_seq2 8,6 9,0E-05 8,6 3,9E-08 Kinase-like protein
comp39841_c1_seq1 1,1 6,0E-05 1,1 2,0E-06 Exordium-like protein
comp37819_c1_seq5 7,9 1,5E-03 8,5 3,6E-10 o-linked c transferase
comp43557_c1_seq2 8,4 7,0E-03 8,6 2,2E-10 tRNA-dihydrouridine synthase
  Root – SF  
comp29599_c0_seq1 −1,3 6,6E-19 −1,9 9,9E-03 Gibberellin-regulated protein
comp41819_c4_seq2 −8,5 1,3E-10 −8,7 4,5E-07 F-box family protein
comp43426_c1_seq15 −7,2 4,8E-07 −7,4 1,9E-04 Sugar transporter
comp37704_c0_seq2 −1,0 3,1E-04 −3,9 5,5E-44 PS II binding protein LHCB1.5
comp42662_c0_seq8 1,6 1,1E-99 1,1 3,1E-05 Cytochrome p450
comp19461_c0_seq1 1,2 7,0E-54 1,1 1,4E-04 Peroxidase 10
comp35114_c0_seq1 1,1 1,4E-45 1,4 5,4E-04 Zinc finger protein
comp19664_c0_seq1 0,8 2,2E-11 1,0 2,3E-03 Thaumatin
comp42100_c0_seq10 7,2 9,2E-06 6,9 7,8E-04 Chromatin binding
  Leaf – RF  
comp36279_c0_seq4 −9,0 1,1E-09 −8,9 1,9E-09 GTP cyclohydrolase
comp23339_c0_seq1 −1,5 1,6E-06 −1,8 7,6E-10 Phosphoglycerate dehydrogenase
comp40475_c2_seq3 −1,1 8,2E-04 −0,9 3,0E-03 Leucine-rich repeat receptor
comp28232_c0_seq1 2,3 4,6E-04 2,0 5,4E-04 Fasciclin-like arabinogalactan-protein
comp30075_c0_seq1 1,8 4,8E-03 2,2 1,4E-05 Lipid transfer protein
comp42008_c3_seq5 3,7 3,5E-06 3,1 2,4E-03 Calcium-binding protein
comp39615_c0_seq1 2,2 3,9E-06 1,8 9,3E-04 Multicopper oxidase
comp42669_c0_seq2 5,1 1,2E-05 3,8 6,2E-03 Cellulose synthase
comp42379_c0_seq7 4,3 9,0E-03 4,4 2,1E-03 Pho1-like protein
  Leaf – SF  
comp30731_c0_seq2 −0,7 1,9E-20 −0,9 1,3E-03 Cbl-interacting serine threonine-protein
comp30800_c0_seq1 −2,7 1,8E-06 −2,2 3,6E-03 Adenylyl-sulfate reductase
comp39235_c1_seq5 −6,7 1,8E-04 −6,7 5,8E-03 Chaperone protein
comp21202_c0_seq1 3,4 3,4E-85 1,4 1,7E-04 Anthocyanidin synthase
comp42008_c3_seq5 2,5 1,6E-41 2,6 6,0E-04 Calcium-binding protein
comp42290_c0_seq1 1,2 3,6E-27 1,8 9,2E-10 Lipoxygenase
comp42379_c0_seq7 8,6 5,4E-11 9,0 1,2E-03 Pho1-like protein
comp43826_c1_seq6 8,8 4,1E-10 7,9 1,1E-05 LRR-NB-ARC domain protein
  1. Significant differential expression was determined by edgeR with a threshold Benjamini-Hochberg adjusted p-value of 0.01, indicated by "FDR"
  2. Abbreviations: endotransgl, endotransglycosidase; PSII, photosystem II