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Table 1 Bacterial isolates and genomic data used in this study

From: Haemophilus influenzae: using comparative genomics to accurately identify a highly recombinogenic human pathogen

Species No. strains (no. with genome data)
Haemophilus influenzae, incl. NTHi and biogroup aegyptius a 338 (201)
Haemophilus haemoglobinophilus 1 (1)
Haemophilus haemolyticus b 107 (32)
Haemophilus parahaemolyticus 2 (1)
Haemophilus parainfluenzae 5 (4)
Haemophilus paraphrohaemolyticus 1 (1)
Haemophilus sp. (novel “fuzzy” species) 17 (13)
Achromobacter sp. 1
Aggregatibacter (formerly Haemophilus) aphrophilus 1
Alcaligenes sp. 1
Alloiococcus otitidis 1
Bacillus sp. 1
Bacteroides fragilis 1
Burkholderia cenocepacia 1
Burkholderia cepacia 1
Burkholderia diffusa 1
Burkholderia multivorans 1
Burkholderia pseudomallei 1
Burkholderia pyrrocinia 1
Burkholderia thailandensis 1
Burkholderia vietnamiensis 1
Burkholderia spp. 2
Chromobacterium violaceum 1
Chryseobacterium sp. 1
Comamonas sp. 1
Cupriavidus spp. 2
Delftia sp. 1
Escherichia coli 1
Klebsiella pneumoniae 1
Moraxella catarrhalis 1
Neisseria meningitidis 1
Pandoraea sp. 1
Pigmentiphaga sp. 1
Proteus mirabilis 1
Pseudomonas aeruginosa 2
Ralstonia mannitolilytica 1
Staphylococcus aureus 2
Staphylococcus epidermidis 1
Stenotrophomonas sp. 1
Streptococcus mitis 1
Streptococcus pneumoniae 1
Streptococcus pyogenes 2
TOTAL 511 (253)
  1. aSpecies determined according to a positive fucP assay result and/or by whole-genome sequencing
  2. bSpecies determined by a negative fucP result, a positive H. haemolyticus hpd HRM result [27], and/or by whole-genome sequencing