Table 1 Statistics for Illumina HiSeq2000 sequencing and de novo transcriptome assembly
Description | Leaf | Root |
|---|---|---|
Total number of HQ reads | 96,143,552 | 74,854,072 |
Total number of bases (Mb) | 9563.22 | 7454.82 |
HQ bases (%) | 97.48 | 97.66 |
Reads with non-ATGC characters (%) | 0.32 | 0.33 |
GC content (%) | 47.94 | 46.84 |
Reads assembled (%) | 81.15 | 81.71 |
Total number of contigs | 69,011 | 64,244 |
Average length (bp) | 667 | 692.5 |
Total length (bp) | 46,032,575 | 44,489,873 |
N50 (bp) | 926 | 992 |