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Table 3 List of transcripts related to diterpene biosynthesis

From: Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

Pathway Transcript ID Transcript annotation Transcript length (bp) Expressiona
MEP ApU56176 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) 2421 1.210593385
  ApU12883 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) 1284 −0.620028298
  ApU13057 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) 2647 −0.064469923
  ApU57524 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) 2529 4.485204599
  ApU8165 1-Deoxy-D-xylulose-5-phosphate reductoisomerase (DXR) 1019 2.090903695
  ApU50057 1-Deoxy-D-xylulose-5-phosphate reductoisomerase (DXR) 1084 2.274895363
  Ap2567 1-Deoxy-D-xylulose-5-phosphate reductoisomerase (DXR) 1013 4.853346
  ApU70472 2-C-Methyl-D-erythritol 4-phosphate cytidylyltransferase (MCT) 1277 3.71794589
  ApU7163 4-Diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) 1553 1.228243799
  ApU3039 2-C-Methyl-D-erythritol 2,4-cyclodiphosphate synthase (MDS) 611 3.330961011
  ApU45802 (E)-4-Hydroxy-3-methylbut-2-enyl-diphosphate synthase (HDS) 2631 3.613822951
  ApU45495 (E)-4-Hydroxy-3-methylbut-2-enyl-diphosphate synthase (HDS) 2664 −0.839568655
  ApU67412 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase (HDR) 1830 5.990336076
  ApU393 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase (HDR) 1773 3.743023121
MEP/MEV ApU9344 Isopentenyl-diphosphate delta-isomerase (IDI) 1165 −2.855299841
  ApU80862 Isopentenyl-diphosphate delta-isomerase (IDI) 426 Root only
MEV ApU45787 Acetyl-CoA C-acetyltransferase (AACT) 758 0.073827478
  ApU3388 Acetyl-CoA C-acetyltransferase (AACT) 1132 −2.201783665
  ApU29957 Hydroxymethylglutaryl-CoA synthase (HMGS) 1009 −0.970530757
  ApU46957 Hydroxymethylglutaryl-CoA synthase (HMGS) 1127 −0.971997692
  ApU2925 Hydroxymethylglutaryl-CoA reductase (HMGR) 2235 1.932136157
  ApU46382 Hydroxymethylglutaryl-CoA reductase (HMGR) 2454 −2.018649251
  ApU51503 Mevalonate kinase (MK) 1202 −0.741169194
  ApU4232 Phosphomevalonate kinase (PMK) 1439 −1.11100184
  ApU58988 Phosphomevalonate kinase (PMK) 1171 −0.311783537
  ApU51812 Diphosphomevalonate decarboxylase (MVD) 573 −1.349116106
  ApU9903 Diphosphomevalonate decarboxylase (MVD) 974 −1.562474564
Diterpene ApU8378 Geranylgeranyl diphosphate synthase (GGPS) 1749 1.018074228
  ApU952 Geranylgeranyl diphosphate synthase (GGPS) 984 2.233068085
  ApU55421 Geranylgeranyl diphosphate synthase (GGPS) 1522 1.364502354
  ApU53774 Ent-copalyl diphosphate synthase (Ent-CPS) 2623 Root only
  ApU55291 Ent-copalyl diphosphate synthase (Ent-CPS) 2567 −0.80001242
  ApU48901 Ent-copalyl diphosphate synthase (Ent-CPS) 2654 7.119944191
  ApU14593 Ent-kaurene synthase (KS) 1544 −1.728307905
  ApU66227 Ent-kaurene synthase (KS) 1707 −2.414805387
  ApU14229 Ent-kaurene oxidase (KO) 1966 −3.699209001
  ApU51425 Ent-kaurenoic acid hydroxylase (KAO) 1938 −6.870577872
  ApU51353 Ent-kaurenoic acid hydroxylase (KAO) 1911 −3.81097751
  ApU77665 Gibberellin 2-oxidase (GA2ox) 666 −4.234871361
  ApU79135 Gibberellin 2-oxidase (GA2ox) 628 −3.741831349
  ApU23389 Gibberellin 2-oxidase (GA2ox) 1330 4.108980573
  ApU10203 Gibberellin 20-oxidase (GA20ox) 635 3.315288446
  ApU51228 Gibberellin 20-oxidase (GA20ox) 1395 2.941320399
  ApU45906 Gibberellin 3-beta-dioxygenase (GA3ox) 1089 −5.116226864
  ApU57038 Momilactone-A synthase (MAS) 1003 −8.215762538
  ApU58121 Momilactone-A synthase (MAS) 846 −9.795908022
  ApU67465 Momilactone-A synthase (MAS) 972 Root only
  ApU1116 Momilactone-A synthase (MAS) 1145 2.550321912
  1. alog2FoldChange (leaf vs root) based on DGE