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Table 3 List of transcripts related to diterpene biosynthesis

From: Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes

Pathway

Transcript ID

Transcript annotation

Transcript length (bp)

Expressiona

MEP

ApU56176

1-Deoxy-D-xylulose-5-phosphate synthase (DXS)

2421

1.210593385

 

ApU12883

1-Deoxy-D-xylulose-5-phosphate synthase (DXS)

1284

−0.620028298

 

ApU13057

1-Deoxy-D-xylulose-5-phosphate synthase (DXS)

2647

−0.064469923

 

ApU57524

1-Deoxy-D-xylulose-5-phosphate synthase (DXS)

2529

4.485204599

 

ApU8165

1-Deoxy-D-xylulose-5-phosphate reductoisomerase (DXR)

1019

2.090903695

 

ApU50057

1-Deoxy-D-xylulose-5-phosphate reductoisomerase (DXR)

1084

2.274895363

 

Ap2567

1-Deoxy-D-xylulose-5-phosphate reductoisomerase (DXR)

1013

4.853346

 

ApU70472

2-C-Methyl-D-erythritol 4-phosphate cytidylyltransferase (MCT)

1277

3.71794589

 

ApU7163

4-Diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK)

1553

1.228243799

 

ApU3039

2-C-Methyl-D-erythritol 2,4-cyclodiphosphate synthase (MDS)

611

3.330961011

 

ApU45802

(E)-4-Hydroxy-3-methylbut-2-enyl-diphosphate synthase (HDS)

2631

3.613822951

 

ApU45495

(E)-4-Hydroxy-3-methylbut-2-enyl-diphosphate synthase (HDS)

2664

−0.839568655

 

ApU67412

4-Hydroxy-3-methylbut-2-enyl diphosphate reductase (HDR)

1830

5.990336076

 

ApU393

4-Hydroxy-3-methylbut-2-enyl diphosphate reductase (HDR)

1773

3.743023121

MEP/MEV

ApU9344

Isopentenyl-diphosphate delta-isomerase (IDI)

1165

−2.855299841

 

ApU80862

Isopentenyl-diphosphate delta-isomerase (IDI)

426

Root only

MEV

ApU45787

Acetyl-CoA C-acetyltransferase (AACT)

758

0.073827478

 

ApU3388

Acetyl-CoA C-acetyltransferase (AACT)

1132

−2.201783665

 

ApU29957

Hydroxymethylglutaryl-CoA synthase (HMGS)

1009

−0.970530757

 

ApU46957

Hydroxymethylglutaryl-CoA synthase (HMGS)

1127

−0.971997692

 

ApU2925

Hydroxymethylglutaryl-CoA reductase (HMGR)

2235

1.932136157

 

ApU46382

Hydroxymethylglutaryl-CoA reductase (HMGR)

2454

−2.018649251

 

ApU51503

Mevalonate kinase (MK)

1202

−0.741169194

 

ApU4232

Phosphomevalonate kinase (PMK)

1439

−1.11100184

 

ApU58988

Phosphomevalonate kinase (PMK)

1171

−0.311783537

 

ApU51812

Diphosphomevalonate decarboxylase (MVD)

573

−1.349116106

 

ApU9903

Diphosphomevalonate decarboxylase (MVD)

974

−1.562474564

Diterpene

ApU8378

Geranylgeranyl diphosphate synthase (GGPS)

1749

1.018074228

 

ApU952

Geranylgeranyl diphosphate synthase (GGPS)

984

2.233068085

 

ApU55421

Geranylgeranyl diphosphate synthase (GGPS)

1522

1.364502354

 

ApU53774

Ent-copalyl diphosphate synthase (Ent-CPS)

2623

Root only

 

ApU55291

Ent-copalyl diphosphate synthase (Ent-CPS)

2567

−0.80001242

 

ApU48901

Ent-copalyl diphosphate synthase (Ent-CPS)

2654

7.119944191

 

ApU14593

Ent-kaurene synthase (KS)

1544

−1.728307905

 

ApU66227

Ent-kaurene synthase (KS)

1707

−2.414805387

 

ApU14229

Ent-kaurene oxidase (KO)

1966

−3.699209001

 

ApU51425

Ent-kaurenoic acid hydroxylase (KAO)

1938

−6.870577872

 

ApU51353

Ent-kaurenoic acid hydroxylase (KAO)

1911

−3.81097751

 

ApU77665

Gibberellin 2-oxidase (GA2ox)

666

−4.234871361

 

ApU79135

Gibberellin 2-oxidase (GA2ox)

628

−3.741831349

 

ApU23389

Gibberellin 2-oxidase (GA2ox)

1330

4.108980573

 

ApU10203

Gibberellin 20-oxidase (GA20ox)

635

3.315288446

 

ApU51228

Gibberellin 20-oxidase (GA20ox)

1395

2.941320399

 

ApU45906

Gibberellin 3-beta-dioxygenase (GA3ox)

1089

−5.116226864

 

ApU57038

Momilactone-A synthase (MAS)

1003

−8.215762538

 

ApU58121

Momilactone-A synthase (MAS)

846

−9.795908022

 

ApU67465

Momilactone-A synthase (MAS)

972

Root only

 

ApU1116

Momilactone-A synthase (MAS)

1145

2.550321912

  1. alog2FoldChange (leaf vs root) based on DGE