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Fig. 3 | BMC Genomics

Fig. 3

From: RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection

Fig. 3

Correlation of expression levels and infectious particles. The part below the diagonal represents Spearman pairwise correlation factors in percent as pie charts; the part above the diagonal shows scatter plots for pairwise comparisons of RPKM and FFU in C57BL/6J and DBA/2J mice. For C57BL/6J mice, RPKM values from mock day3 and from days 1 to 14 p.i., and for DBA/2J, RPKM values from mock day 3 and days 1 to 5 p.i. were used for the analysis. Data were ordered by day, +1 added and then log2 transformed. FFU were taken from [15], offset by 1 and log2 transformed. Pearson pairwise correlations between RPKM and FFU for C57BL/6J were: corr = 0.8999419, p-value = 3.676e-07; and for DBA/2J: cor = 0.8832289, p-value = 0.0001401

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