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Table 2 DEG genes that overlap genes described in siRNA screens

From: RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection

DEG B6d3 DEG B6d5 DEG D2d3 DEG D2d5 DEG B6D2d3 DEG B6D2d5
AREG AREG AREG AREG AREG AREG
ATF3 ATF3 ATF3 ATF3 ATF3 ATF3
B2M B2M B2M B2M B2M B2M
BATF2 CASP1 BATF2 BATF2 BATF2 CD274
CD274 CD274 CASP1 CD274 CD274 CXCL2
CXCL2 CXCL2 CD274 CXCL2 CXCL2 IFI44
DUSP5 IFI44 CXCL2 DUSP5 DUSP5 IRF9
FAM46A IRF9 DUSP5 FKBP11 FAM46A NFKB2
IFI44 NFKB2 FAM46A IFI44 IFI44 PHF11
IRF7 PHF11 IFI44 IL15RA IRF7 STAT1
IRF9 STAT1 IL15RA IRF7 IRF9 TNFAIP2
LCN2 TNFAIP2 IRF7 IRF9 LCN2  
LGALS3BP ZC3HAV1 IRF9 LCN2 LGALS3BP  
NFKB2   LCN2 LGALS3BP NFKB2  
PHF11   LGALS3BP NFKB2 PHF11  
RNF114   NFKB2 NFKBIA RNF114  
STAT1   NFKBIA PHF11 STAT1  
TNFAIP2   PHF11 PPP1R15A TNFAIP2  
   PLSCR1 RNF114   
   PNPT1 STAT1   
   PPP1R15A TNFAIP2   
   RNF114    
   STAT1    
   TNFAIP2    
   ZC3HAV1    
  1. List of DEG genes that overlap with genes described by [19]. DEG B6d3, DEG B6d5 genes expressed differentially in infected C57BL/6J compared to mock-treated controls on days 3 and 5 p.i., respectively; DEG D2d3, DEG D2d5 genes expressed differentially in infected DBA/2J compared to mock-treated controls on days 3 and 5 p.i., respectively; DEG B6D2d3, DEG B6D2d5: genes expressed differentially in infected C57BL/6J compared to infected DBA/2J mice on days 3 and 5 p.i., respectively