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Table 1 S. goodei and S. saxicola ortholog pairs that were identified as positive selection

From: Gonadal transcriptomics elucidate patterns of adaptive evolution within marine rockfishes (Sebastes)

Annotation

Ka

Ks

Ka/Ks

Length

S. goodei Hit ACC

S. goodei E-value

S. saxicola Hit ACC

S. saxicola E-value

12 kda fk506-binding protein

0.058

0.011

5.262

327

P48375

4.55E-36

P48375

2.16E-38

40s ribosomal protein x isoform

0.014

0.004

3.209

594

Q642H9

7.20E-144

N/A

N/A

60s ribosomal protein l17

0.232

0.162

1.434

153

P18621

9.36E-62

N/A

N/A

60s ribosomal protein l9

0.019

0.011

1.735

300

Q90YW0

2.53E-92

Q90YW0

6.04E-44

atp synthase mitochondrial f1 complex assembly factor 1 flags: precusor

0.032

0.02

1.583

210

Q1L987

2.27E-33

Q1L987

3.14E-81

bone morphogenetic protein 7 flags: precursor

0.011

0.01

1.124

276

P23359

1.60E-30

P23359

4.32E-45

chitobiosyldiphosphodolichol beta-mannosyltransferase

0.021

0.019

1.104

249

Q9BT22

1.46E-52

Q9BT22

5.16E-29

choline transporter-like protein 4 solute carrier family 44 member

0.029

0.021

1.368

372

Q7T2B0

3.20E-60

Q7T2B0

8.71E-80

cytochrome c oxidase subunit mitochondrial flags: precursor

0.01

0.009

1.07

423

P00426

3.68E-55

B0VYX4

5.39E-56

cytochrome p450 26a1

0.117

0.059

1.979

168

P79739

8.97E-18

P79739

9.14E-29

disintegrin and metalloproteinase domain-containing protein 9 flags: precursor

0.095

0.057

1.666

378

Q61072

2.15E-18

Q61072

1.42E-08

dna ligase 3

0.04

0.027

1.48

345

P49916

1.25E-39

N/A

N/A

dna mismatch repair protein mlh1

0.018

0.017

1.052

291

P40692

1.03E-79

P40692

3.94E-35

dna primase large subunit

0.126

0.048

2.651

354

O89044

1.47E-57

O89044

8.29E-25

double-strand-break repair protein rad21 homolog

0.13

0.087

1.493

249

O93310

4.30E-13

N/A

N/A

eukaryotic translation initiation factor 2 subunit 3

0.098

0.095

1.031

429

Q2KHU8

1.72E-110

Q2KHU8

1.35E-59

f-box only protein 11

0.081

0.067

1.204

288

Q86XK2

1.97E-49

Q86XK2

2.69E-23

f-box only protein 43 endogenous meiotic inhibitor 2

0.031

0.022

1.426

753

Q4G163

1.06E-23

Q8AXF4

2.07E-08

glioma tumor suppressor candidate region gene 2 protein

0.017

0.008

2.081

351

Q9NZM5

8.21E-33

Q9NZM5

6.12E-28

growth factor receptor-bound protein 10

0.113

0.104

1.085

216

Q13322

2.80E-47

N/A

N/A

gtpase mitochondrial

0.13

0.125

1.037

297

B5X2B8

2.46E-27

B5X2B8

1.21E-07

guanine nucleotide-binding protein g subunit alpha-2

0.09

0.06

1.491

333

P04897

3.39E-82

P04897

2.16E-43

h-2 class i histocompatibility q10 alpha chain flags: precursor

0.104

0.039

2.681

522

P01898

8.97E-44

P15979

2.66E-32

histidine triad nucleotide-binding protein 3

0.094

0.088

1.069

414

Q28BZ2

1.82E-39

Q28BZ2

7.95E-34

homolog subfamily a member 4 flags: precursor

0.037

0.029

1.289

231

Q8WW22

2.56E-49

Q8WW22

2.16E-25

importin subunit alpha-1

0.114

0.091

1.254

789

P52170

1.64E-93

P52170

2.67E-72

inositol-3-phosphate synthase 1-a

0.053

0.046

1.152

465

Q7ZXY0

3.82E-41

Q7ZXY0

5.38E-37

kelch domain-containing protein 1

0.022

0.011

2.034

318

Q8N7A1

3.47E-34

Q8N7A1

1.02E-18

lag1 longevity assurance homolog 2

0.022

0.014

1.623

258

Q96G23

2.83E-59

Q3ZBF8

6.32E-42

lamina-associated polypeptide isoform beta

0.027

0.015

1.803

432

Q62733

4.90E-10

Q62733

9.94E-09

lipid phosphate phosphohydrolase 3

0.09

0.043

2.096

201

Q3SZE3

3.77E-25

Q3SZE3

1.14E-50

map3k12-binding inhibitory protein 1

0.009

0.008

1.081

450

Q99LQ1

1.89E-38

N/A

N/A

mif4g domain-containing protein a

0.036

0.034

1.034

174

B0UXU6

2.02E-28

B0UXU6

3.33E-18

n-acetylneuraminate lyase

0.045

0.038

1.184

477

Q5RDY1

3.28E-54

Q6NYR8

8.41E-72

nad-dependent deacetylase sirtuin-5 flags: precursor

0.029

0.027

1.111

354

Q8K2C6

4.35E-65

Q3ZBQ0

2.41E-32

nuclear pore complex protein nup54

0.075

0.044

1.714

492

P70582

3.74E-33

N/A

N/A

p43 5s rna-binding protein

0.056

0.038

1.485

249

P25066

9.42E-14

P25066

4.10E-08

pentatricopeptide repeat-containing protein 2

0.012

0.011

1.073

585

Q566X6

1.63E-44

Q566X6

7.01E-97

peptidyl-prolyl cis-trans isomerase-like 2

0.018

0.008

2.303

471

Q13356

4.11E-74

Q13356

2.29E-71

poly-specific ribonuclease parn

0.019

0.016

1.2

375

O95453

4.25E-71

O95453

1.25E-61

pq-loop repeat-containing protein 2

0.029

0.018

1.605

402

Q8C4N4

2.03E-42

Q8C4N4

4.36E-41

proteasome subunit alpha type-2

0.045

0.013

3.55

423

O73672

8.15E-122

O73672

1.73E-64

protection of telomeres protein 1

0.022

0.007

3.335

528

Q9NUX5

4.88E-20

Q9NUX5

1.89E-19

protein b4

0.027

0.027

1.001

492

P15308

2.41E-12

P15308

1.47E-13

protein cwc15 homolog

0.012

0.01

1.193

516

Q6IQU4

2.95E-27

Q6IQU4

1.63E-18

protein lin-9 homolog

0.031

0.018

1.706

372

Q5RHQ8

1.12E-79

Q5RHQ8

2.81E-36

protein lsm14 homolog b

0.029

0.014

2.063

501

Q566L7

1.29E-46

Q566L7

3.57E-34

protein serac1

0.05

0.035

1.403

411

Q5SNQ7

4.94E-60

Q5SNQ7

1.60E-44

ras-related protein rab-11a flags: precursor

0.106

0.028

3.786

246

Q5ZJN2

1.06E-65

Q5ZJN2

5.37E-25

selenoprotein t1a flags: precursor

0.033

0.016

2.056

288

Q802F2

1.95E-80

Q802F2

1.06E-35

synaptotagmin-like protein 2 exophilin-4

0.064

0.046

1.374

246

Q99N50

5.69E-34

Q99N50

1.06E-19

tfiia-alpha and beta-like factor

0.034

0.023

1.444

339

Q9UNN4

1.80E-32

Q9UNN4

2.87E-23

tho complex subunit 1

0.033

0.027

1.21

291

Q96FV9

2.55E-68

Q96FV9

1.49E-42

torsin-1b

0.09

0.011

8.023

258

O14657

4.26E-38

O14657

7.91E-07

transcription initiation factor tfiid subunit 12

0.013

0.01

1.259

501

Q3T174

3.39E-61

Q3T174

1.90E-29

translin

0.008

0.008

1.068

486

Q62348

2.08E-78

Q62348

9.20E-58

transmembrane protein 106b

0.019

0.011

1.817

360

Q1LWC2

1.23E-18

Q1LWC2

1.28E-25

transmembrane protein 50a

0.053

0.035

1.518

279

O95807

1.58E-65

O95807

3.27E-37

trna guanosine-2 -o-methyltransferase trm11 homolog

0.036

0.021

1.704

285

Q05B63

2.25E-57

Q7TNK6

7.43E-34

tumor necrosis factor ligand superfamily member 10

0.151

0.127

1.186

309

P50591

2.46E-15

P50591

1.43E-08

tumor necrosis factor receptor superfamily member

0.12

0.105

1.14

309

Q92956

2.24E-28

Q92956

6.81E-13

ubiquilin-4

0.042

0.034

1.234

384

Q99NB8

8.99E-31

Q5R684

3.98E-27

ubiquitin fusion degradation protein 1 homolog

0.011

0.01

1.05

378

Q9ES53

2.56E-98

Q9ES53

3.51E-78

ubiquitin-conjugating enzyme e2 n

0.182

0.136

1.342

171

Q9EQX9

8.30E-36

Q9EQX9

3.51E-07

ubiquitin-like modifier-activating enzyme atg7

0.031

0.013

2.269

276

O95352

4.22E-63

Q5ZKY2

6.44E-33

upf0420 protein c16orf58

0.034

0.029

1.188

435

Q96GQ5

3.11E-40

Q499P8

5.73E-29

vacuolar protein sorting-associated protein 16 homolog

0.016

0.012

1.312

477

Q5E9L7

2.96E-110

Q5E9L7

1.89E-91

wd repeat-containing protein 5

0.121

0.08

1.513

288

Q2KIG2

2.23E-27

Q2KIG2

3.23E-45

zinc finger cchc domain-containing protein 4

0.044

0.02

2.155

450

Q66IH9

2.42E-67

Q6DCD7

1.19E-33

zinc finger hit domain-containing protein 3

0.01

0.009

1.194

408

Q9CQK1

4.83E-24

Q15649

8.10E-24

zona pellucida sperm-binding protein 4 flags: precursor

0.048

0.042

1.136

402

Q12836

1.35E-22

Q12836

1.78E-18

  1. Bold face indicates a significant Fisher’s exact test (p-value < 0.05)