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Table 1 Summary of sequences analysis

From: De novo transcriptome sequencing and comprehensive analysis of the drought-responsive genes in the desert plant Cynanchum komarovii

Sample

Raw reads

Clean reads

Clean bases

Error (%)

Q20 (%)

Q30 (%)

GC Content (%)

CK_1_1

34,754,202

33,279,869

3.33G

0.03

97.38

91.84

43.12

CK_1_2

34,754,202

33,279,869

3.33G

0.04

96.52

90.36

43.16

CK_2_1

37,597,921

35,233,977

3.52G

0.03

97.44

91.95

42.81

CK_2_2

37,597,921

35,233,977

3.52G

0.03

96.74

90.81

42.85

DT_1_1

36,559,636

35,218,245

3.52G

0.03

97.37

91.84

42.67

DT_1_2

36,559,636

35,218,245

3.52G

0.04

96.49

90.32

42.69

DT_2_1

35,239,113

33,980,800

3.40G

0.03

97.43

92.00

42.65

DT_2_2

35,239,113

33,980,800

3.40G

0.04

96.54

90.47

42.67

Total

288,301,744

275,425,782

27.54G

    
  1. CK_1 and CK_2: Controlled sample (two independent biological replicates)
  2. DT_1 and DT_2: Drought treated sample (two independent biological replicates)
  3. CK_1_1: Reads sequencing of controlled sample 1 from the left
  4. CK_1_2: Reads sequencing of controlled sample 1 from the right
  5. Q20: The percentage of bases with a Phred value >20
  6. Q30: The percentage of bases with a Phred value >30