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Table 5 Frequency of di- and tri-nucleotide EST-SSRs

From: De novo transcriptome sequencing and comprehensive analysis of the drought-responsive genes in the desert plant Cynanchum komarovii

Repeats

Repeat numbers

Total

(%)

Motif

5

6

7

8

9

10

>10

AC/GT

-

356

175

127

84

59

49

850

5.47 %

AG/CT

-

752

511

377

301

230

73

2,244

14.45 %

AT/AT

-

1,589

1,326

1,562

1,385

471

49

6,382

41.09 %

CG/CG

-

23

6

-

-

-

-

29

0.19 %

AAC/GTT

243

119

59

4

-

-

-

425

2.74 %

AAG/CTT

833

479

184

4

-

-

2

1,502

9.67 %

AAT/ATT

569

380

151

3

-

-

-

1,103

7.10 %

ACC/GGT

247

98

59

4

-

-

1

409

2.63 %

ACG/CGT

66

29

7

1

-

-

-

103

0.66 %

ACT/AGT

116

46

15

3

-

-

-

180

1.16 %

AGC/CTG

477

225

84

1

-

-

-

787

5.07 %

AGG/CCT

296

135

75

5

-

-

1

512

3.30 %

ATC/ATG

398

228

110

4

-

-

1

741

4.77 %

CCG/CGG

182

55

24

2

-

-

-

263

1.69 %

Total

3,427

4,514

2,786

2,097

1,770

760

176

15,530

 

(%)

22.07 %

29.07 %

17.94 %

13.50 %

11.40 %

4.89 %

1.13 %

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