Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius)

Table 1 Statistics of denovo genome sequence assembly of re-sequenced nine cultivars of Lupinus angustifolius

	Unicrop	Yorrel	Merrit	Kalya	Tallerack	Quilinock	Mandelup	Coromup	Jenabilup
Raw data (Mbp)	13,334	14,322	15,958	15,760	11,043	17,275	17,727	15,242	14,588
Clean data (Mbp)	12,714	13,642	15,275	15,069	10,524	16,471	16,936	14,605	14,003
Q20 base rate (%)	95.3	96.6	96.9	97.0	95.9	96.8	97.0	97.0	97.1
Number of scaffolds	208,181	277,622	309,904	371,733	256,387	279,705	383,911	268,036	363,979
Total scaffold span (Mbp)	485	497	501	513	488	500	512	504	498
Scaffold N50 (bp)	10,864	9,463	8,814	9,307	9,070	9,835	9,423	10,487	7,633
Average scaffold length (bp)	2,332	1,789	1,617	1,380	1,905	1,789	1,332	1,882	1,369
Longest scaffold (bp)	305,995	183,544	191,423	156,385	229,074	228,256	147,382	211,945	125,123
GC content (%)	32.96	32.70	32.87	32.87	32.62	32.72	32.90	32.65	32.89

ISSN: 1471-2164