Skip to main content

Table 1 Statistics of denovo genome sequence assembly of re-sequenced nine cultivars of Lupinus angustifolius

From: Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius)

  Unicrop Yorrel Merrit Kalya Tallerack Quilinock Mandelup Coromup Jenabilup
Raw data (Mbp) 13,334 14,322 15,958 15,760 11,043 17,275 17,727 15,242 14,588
Clean data (Mbp) 12,714 13,642 15,275 15,069 10,524 16,471 16,936 14,605 14,003
Q20 base rate (%) 95.3 96.6 96.9 97.0 95.9 96.8 97.0 97.0 97.1
Number of scaffolds 208,181 277,622 309,904 371,733 256,387 279,705 383,911 268,036 363,979
Total scaffold span (Mbp) 485 497 501 513 488 500 512 504 498
Scaffold N50 (bp) 10,864 9,463 8,814 9,307 9,070 9,835 9,423 10,487 7,633
Average scaffold length (bp) 2,332 1,789 1,617 1,380 1,905 1,789 1,332 1,882 1,369
Longest scaffold (bp) 305,995 183,544 191,423 156,385 229,074 228,256 147,382 211,945 125,123
GC content (%) 32.96 32.70 32.87 32.87 32.62 32.72 32.90 32.65 32.89
\