Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius)

Table 2 Numbers of SNP markers and InDel markers discovered by pairwise comparison of whole genome sequencing and re-sequencing data among 10 cultivars of *Lupinus angustifolius**

Lupin cultivars		Unicrop	Yorrel	Merrit	Kalya	Tallerack	Quilinock	Mandelup	Coromup	Jenabillup
Yorrel	SNP	361,783
Yorrel	InDel	74,074
Merrit	SNP	387,619	379,884
Merrit	InDel	42,670	53,825
Kalya	SNP	231,674	363,644	399,442
Kalya	InDel	50,771	70,606	40,572
Tallerack	SNP	457,861	516,424	581,288	466,314
Tallerack	InDel	84,239	100,668	71,220	80,863
Quilinock	SNP	358,425	402,839	386,350	370,174	521,485
Quilinock	InDel	60,592	74,470	39,501	56,952	86,272
Mandelup	SNP	383,509	333,375	363,518	405,193	525,458	399,216
Mandelup	InDel	59,611	62,906	34,838	57,048	83,158	57,406
Coromup	SNP	358,729	318,466	338,840	377,613	509,809	365,480	210,394
Coromup	InDel	59,469	61,381	35,666	57,069	84,167	55,839	39,077
Jenabillup	SNP	325,324	360,401	312,064	330,028	452,170	180,596	287,423	266,773
Jenabillup	InDel	52,035	65,258	27,406	48,075	75,939	33,094	42,073	41,398
Tanjil (Reference)	SNP	644,901	510,722	432,717	564,221	795,735	609,359	601,497	543,048	467,465
Tanjil (Reference)	InDel	93,730	105,235	59,780	90,986	122,513	93,675	88,261	88,910	79,623

ISSN: 1471-2164