Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin ( Lupinus angustifolius )

Table 3 Summary of SNP markers and InDel markers integrated into the sequence-defined genetic linkage map through sequence comparison on scaffolds in Lupinus angustifolius ^a

Linkage groups	Genetic length (cM)	Number of anchored scaffolds^b	Number of SNP markers detected	Number of InDel markers detected
SLG-1	234.3	763	35,605	5,036
SLG-2	156.7	724	24,158	5,190
SLG-3	149	236	8,071	2,027
SLG-4	144.2	400	14,160	3,202
SLG-5	101.9	365	13,028	2,654
SLG-6	89	129	4,830	1,437
SLG-7	86.5	114	6,959	1,512
SLG-8	85	289	13,761	1,688
SLG-9	83.5	155	8,772	1,578
SLG-10	82.6	138	6,230	1,132
SLG-11	82.2	344	13,869	2,164
SLG-12	64.9	143	5,778	1,094
SLG-13	52.2	155	6,566	1,022
SLG-14	51.1	57	2,806	735
SLG-15	34.5	32	1,676	430
SLG-16	33.3	47	1,468	443
SLG-17	32.4	40	1,612	549
SLG-18	26.6	28	1,616	478
SLG-19	20.6	13	1,499	416
SLG-20	19.4	42	2,175	461
Sub total	1629.9	4,214	174,639	33,248

^aThe sequence-defined genetic linkage map has been published previously [38]
^bFull list of scaffolds anchored on the genetic linkage map, and the number of markers detected from each scaffold are presented in Additional file 2

ISSN: 1471-2164