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Table 3 Summary of SNP markers and InDel markers integrated into the sequence-defined genetic linkage map through sequence comparison on scaffolds in Lupinus angustifolius a

From: Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius)

Linkage groups Genetic length (cM) Number of anchored scaffoldsb Number of SNP markers detected Number of InDel markers detected
SLG-1 234.3 763 35,605 5,036
SLG-2 156.7 724 24,158 5,190
SLG-3 149 236 8,071 2,027
SLG-4 144.2 400 14,160 3,202
SLG-5 101.9 365 13,028 2,654
SLG-6 89 129 4,830 1,437
SLG-7 86.5 114 6,959 1,512
SLG-8 85 289 13,761 1,688
SLG-9 83.5 155 8,772 1,578
SLG-10 82.6 138 6,230 1,132
SLG-11 82.2 344 13,869 2,164
SLG-12 64.9 143 5,778 1,094
SLG-13 52.2 155 6,566 1,022
SLG-14 51.1 57 2,806 735
SLG-15 34.5 32 1,676 430
SLG-16 33.3 47 1,468 443
SLG-17 32.4 40 1,612 549
SLG-18 26.6 28 1,616 478
SLG-19 20.6 13 1,499 416
SLG-20 19.4 42 2,175 461
Sub total 1629.9 4,214 174,639 33,248
  1. aThe sequence-defined genetic linkage map has been published previously [38]
  2. bFull list of scaffolds anchored on the genetic linkage map, and the number of markers detected from each scaffold are presented in Additional file 2