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Table 3 Summary of SNP markers and InDel markers integrated into the sequence-defined genetic linkage map through sequence comparison on scaffolds in Lupinus angustifolius a

From: Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius)

Linkage groups

Genetic length (cM)

Number of anchored scaffoldsb

Number of SNP markers detected

Number of InDel markers detected

SLG-1

234.3

763

35,605

5,036

SLG-2

156.7

724

24,158

5,190

SLG-3

149

236

8,071

2,027

SLG-4

144.2

400

14,160

3,202

SLG-5

101.9

365

13,028

2,654

SLG-6

89

129

4,830

1,437

SLG-7

86.5

114

6,959

1,512

SLG-8

85

289

13,761

1,688

SLG-9

83.5

155

8,772

1,578

SLG-10

82.6

138

6,230

1,132

SLG-11

82.2

344

13,869

2,164

SLG-12

64.9

143

5,778

1,094

SLG-13

52.2

155

6,566

1,022

SLG-14

51.1

57

2,806

735

SLG-15

34.5

32

1,676

430

SLG-16

33.3

47

1,468

443

SLG-17

32.4

40

1,612

549

SLG-18

26.6

28

1,616

478

SLG-19

20.6

13

1,499

416

SLG-20

19.4

42

2,175

461

Sub total

1629.9

4,214

174,639

33,248

  1. aThe sequence-defined genetic linkage map has been published previously [38]
  2. bFull list of scaffolds anchored on the genetic linkage map, and the number of markers detected from each scaffold are presented in Additional file 2
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BMC Genomics

ISSN: 1471-2164

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