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Table 7 Validation of sequence-specific SNP markers identified from genotyping markers on a genetic linkage map flanking the R gene PhtjR conferring resistance to phomopsis stem blight disease on all historical and current commercial cultivars of Lupinus angustifolius released in Australia

From: Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius)

  1. aGenotypes of R gene PhtjR on commercial cultivars are presented as: R = presence of PhtjR gene; S = absence of PhtjR gene [44]
  2. bGenetic distance of the marker to the R gene PhtjR in centiMorgans (cM) was adapted from the mapping studies [38]
  3. cMarkers showing R-allele genotype on cultivars without the R gene (false positives) are in highlighted in red
  4. dSNP markers showing marker genotypes completely consistent with the PhtjR gene phenotypes in all 27 commercial cultivars (no false positive) are diagnostic markers, and are highlighted in green
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BMC Genomics

ISSN: 1471-2164

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