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Table 9 Conversion of SNP markers and InDel markers arising from marker mining on scaffold84773 into sequence-specific PCR markers in Lupinus angustifolius

From: Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius)

Marker name

Primers

Primer sequence (5′-3′)

SNP 20

SNP20F

GTCCCTGCCATTATTAATAGTTACT

SNP20R

CATCATGAGTCAATTTACCACTTA

SNP 25

SNP25F

GTCACTAATTTTATCTTTGCAAGA

SNP25R

GATCATAAGAATAATAATAATAATTTGGT

SNP 250

SNP250F

GACTTAGTAATGTGCAACAAGAG

SNP250R

CTGACACTACAGGTTCGCCT

SNP 263

SNP263F

GGAACATTGTGATTCAGTCACC

SNP263R

GATAGGTTTGTTGCAATAAGCG

SNP264

SNP264F

GTTTCTTAGTTGCATAGTTGCAA

SNP264R

CAAAACATTCATAAGTAACAAGG

SNP271

SNP271F

CGACACCATCTGATATATGAAAATAA

SNP271R

ACCGGAAATCTGTGTTTTTC

InDel2

InDel2F

GATAAAGTATATCTAAATTATGTTTGC

InDel2R

CTATATTTTGTATCAATTATAACAAATT

InDel10

InDel10F

GTTAAGTGGTAAATTGACTCATG

InDel10R

GTTTTRCATTCTTGCAAAGATAAAATTAG

InDel28

InDel28F

CTACAATAGCCACACAAATAG

InDel28R

GTTTAGATGGCCMTGTGC

InDel66

InDel66F

CTTCTGAGTTGGACCATAAAC

InDel66R

ACTCACATTTACAGAACTTTAACT