TY - JOUR AU - Chiodini, R. J. AU - Rossiter, C. A. PY - 1996 DA - 1996// TI - Paratuberculosis: a potential zoonosis? JO - Vet Clin North Am Food Anim Pract VL - 12 ID - Chiodini1996 ER - TY - JOUR AU - Autschbach, F. AU - Eisold, S. AU - Hinz, U. AU - Zinser, S. AU - Linnebacher, M. AU - Giese, T. PY - 2005 DA - 2005// TI - High prevalence of Mycobacterium avium subspecies paratuberculosis IS900 DNA in gut tissues from individuals with Crohn’s disease JO - Gut VL - 54 UR - https://doi.org/10.1136/gut.2004.045526 DO - 10.1136/gut.2004.045526 ID - Autschbach2005 ER - TY - JOUR AU - Behr, M. A. AU - Kapur, V. PY - 2008 DA - 2008// TI - The evidence for Mycobacterium paratuberculosis in Crohn’s disease JO - Curr Opin Gastroenterol VL - 24 UR - https://doi.org/10.1097/MOG.0b013e3282f1dcc4 DO - 10.1097/MOG.0b013e3282f1dcc4 ID - Behr2008 ER - TY - JOUR AU - Mackenzie, N. AU - Alexander, D. C. AU - Turenne, C. Y. AU - Behr, M. A. AU - Buck, J. M. PY - 2009 DA - 2009// TI - Genomic comparison of PE and PPE genes in the Mycobacterium avium complex JO - J Clin Microbiol VL - 47 UR - https://doi.org/10.1128/JCM.01313-08 DO - 10.1128/JCM.01313-08 ID - Mackenzie2009 ER - TY - BOOK PY - 2012 DA - 2012// TI - Isolation of Mycobacterium sp. from patients with Inflammatory Bowel Disease. 11th International Colloquium on Paratuberculosis PB - Proceedings of the 11th Colloquim on Paratuberculosis CY - Sydney, Australia ID - ref5 ER - TY - JOUR AU - Kirkwood, C. D. AU - Wagner, J. AU - Boniface, K. AU - Vaughan, J. AU - Michalski, W. P. AU - Catto-Smith, A. G. PY - 2009 DA - 2009// TI - Mycobacterium avium subspecies paratuberculosis in children with early-onset Crohn’s disease JO - Inflamm Bowel Dis VL - 15 UR - https://doi.org/10.1002/ibd.20967 DO - 10.1002/ibd.20967 ID - Kirkwood2009 ER - TY - JOUR AU - Naser, S. A. AU - Schwartz, D. AU - Shafran, I. PY - 2000 DA - 2000// TI - Isolation of Mycobacterium avium subsp paratuberculosis from breast milk of Crohn’s disease patients JO - Am J Gastroenterol VL - 95 UR - https://doi.org/10.1111/j.1572-0241.2000.01954.x DO - 10.1111/j.1572-0241.2000.01954.x ID - Naser2000 ER - TY - JOUR AU - Naser, S. A. AU - Ghobrial, G. AU - Romero, C. AU - Valentine, J. F. PY - 2004 DA - 2004// TI - Culture of Mycobacterium avium subspecies paratuberculosis from the blood of patients with Crohn’s disease JO - Lancet VL - 364 UR - https://doi.org/10.1016/S0140-6736(04)17058-X DO - 10.1016/S0140-6736(04)17058-X ID - Naser2004 ER - TY - JOUR AU - Chiodini, R. J. AU - Kruiningen, H. J. AU - Thayer, W. R. AU - Merkal, R. S. AU - Coutu, J. A. PY - 1984 DA - 1984// TI - Possible role of mycobacteria in inflammatory bowel disease. I. An unclassified Mycobacterium species isolated from patients with Crohn’s disease JO - Dig Dis Sci VL - 29 UR - https://doi.org/10.1007/BF01317078 DO - 10.1007/BF01317078 ID - Chiodini1984 ER - TY - JOUR AU - Bannantine, J. P. AU - Baechler, E. AU - Zhang, Q. AU - Li, L. AU - Kapur, V. PY - 2002 DA - 2002// TI - Genome scale comparison of Mycobacterium avium subsp. paratuberculosis with Mycobacterium avium subsp. avium reveals potential diagnostic sequences JO - J Clin Microbiol VL - 40 UR - https://doi.org/10.1128/JCM.40.4.1303-1310.2002 DO - 10.1128/JCM.40.4.1303-1310.2002 ID - Bannantine2002 ER - TY - JOUR AU - Semret, M. AU - Zhai, G. AU - Mostowy, S. AU - Cleto, C. AU - Alexander, D. AU - Cangelosi, G. PY - 2004 DA - 2004// TI - Extensive genomic polymorphism within Mycobacterium avium JO - J Bacteriol VL - 186 UR - https://doi.org/10.1128/JB.186.18.6332-6334.2004 DO - 10.1128/JB.186.18.6332-6334.2004 ID - Semret2004 ER - TY - JOUR AU - Wynne, J. W. AU - Bull, T. J. AU - Seemann, T. AU - Bulach, D. M. AU - Wagner, J. AU - Kirkwood, C. D. PY - 2011 DA - 2011// TI - Exploring the zoonotic potential of Mycobacterium avium subspecies paratuberculosis through comparative genomics JO - PLoS One VL - 6 UR - https://doi.org/10.1371/journal.pone.0022171 DO - 10.1371/journal.pone.0022171 ID - Wynne2011 ER - TY - JOUR AU - Ghosh, P. AU - Hsu, C. AU - Alyamani, E. J. AU - Shehata, M. M. AU - Al-Dubaib, M. A. AU - Al-Naeem, A. PY - 2012 DA - 2012// TI - Genome-wide analysis of the emerging infection with Mycobacterium avium subspecies paratuberculosis in the Arabian camels (Camelus dromedarius) JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0031947 DO - 10.1371/journal.pone.0031947 ID - Ghosh2012 ER - TY - JOUR AU - Hsu, C. Y. AU - Wu, C. W. AU - Talaat, A. M. PY - 2011 DA - 2011// TI - Genome-Wide Sequence Variation among Mycobacterium avium Subspecies paratuberculosis Isolates: a better understanding of Johne’s Disease Transmission Dynamics JO - Front Microbiol VL - 2 UR - https://doi.org/10.3389/fmicb.2011.00236 DO - 10.3389/fmicb.2011.00236 ID - Hsu2011 ER - TY - JOUR AU - Paustian, M. L. AU - Amonsin, A. AU - Kapur, V. AU - Bannantine, J. P. PY - 2004 DA - 2004// TI - Characterization of novel coding sequences specific to Mycobacterium avium subsp. paratuberculosis: implications for diagnosis of Johne’s Disease JO - J Clin Microbiol VL - 42 UR - https://doi.org/10.1128/JCM.42.6.2675-2681.2004 DO - 10.1128/JCM.42.6.2675-2681.2004 ID - Paustian2004 ER - TY - JOUR AU - Domenech, P. AU - Reed, M. B. PY - 2009 DA - 2009// TI - Rapid and spontaneous loss of phthiocerol dimycocerosate (PDIM) from Mycobacterium tuberculosis grown in vitro: implications for virulence studies JO - Microbiology VL - 155 UR - https://doi.org/10.1099/mic.0.029199-0 DO - 10.1099/mic.0.029199-0 ID - Domenech2009 ER - TY - BOOK AU - Calmette, A. PY - 1927 DA - 1927// TI - La Vaccination Preventive Contre la Tuberculose. Masson Paris ID - Calmette1927 ER - TY - JOUR AU - Uchiya, K. AU - Takahashi, H. AU - Yagi, T. AU - Moriyama, M. AU - Inagaki, T. AU - Ichikawa, K. PY - 2013 DA - 2013// TI - Comparative genome analysis of Mycobacterium avium revealed genetic diversity in strains that cause pulmonary and disseminated disease JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0071831 DO - 10.1371/journal.pone.0071831 ID - Uchiya2013 ER - TY - JOUR AU - Sampson, S. L. PY - 2011 DA - 2011// TI - Mycobacterial PE/PPE proteins at the host-pathogen interface JO - Clin Dev Immunol VL - 2011 UR - https://doi.org/10.1155/2011/497203 DO - 10.1155/2011/497203 ID - Sampson2011 ER - TY - JOUR AU - McGuire, A. M. AU - Weiner, B. AU - Park, S. T. AU - Wapinski, I. AU - Raman, S. AU - Dolganov, G. PY - 2012 DA - 2012// TI - Comparative analysis of Mycobacterium and related Actinomycetes yields insight into the evolution of Mycobacterium tuberculosis pathogenesis JO - BMC Genomics VL - 13 UR - https://doi.org/10.1186/1471-2164-13-120 DO - 10.1186/1471-2164-13-120 ID - McGuire2012 ER - TY - JOUR AU - Zhang, F. AU - Xie, J. P. PY - 2011 DA - 2011// TI - Mammalian cell entry gene family of Mycobacterium tuberculosis JO - Mol Cell Biochem VL - 352 UR - https://doi.org/10.1007/s11010-011-0733-5 DO - 10.1007/s11010-011-0733-5 ID - Zhang2011 ER - TY - JOUR AU - Whittington, R. J. AU - Begg, D. J. AU - Silva, K. AU - Plain, K. M. AU - Purdie, A. C. PY - 2012 DA - 2012// TI - Comparative immunological and microbiological aspects of paratuberculosis as a model mycobacterial infection JO - Vet Immunol Immunopathol VL - 148 UR - https://doi.org/10.1016/j.vetimm.2011.03.003 DO - 10.1016/j.vetimm.2011.03.003 ID - Whittington2012 ER - TY - JOUR AU - Cole, S. T. AU - Brosch, R. AU - Parkhill, J. AU - Garnier, T. AU - Churcher, C. AU - Harris, D. PY - 1998 DA - 1998// TI - Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence JO - Nature VL - 393 UR - https://doi.org/10.1038/31159 DO - 10.1038/31159 ID - Cole1998 ER - TY - JOUR AU - Li, L. AU - Bannantine, J. P. AU - Zhang, Q. AU - Amonsin, A. AU - May, B. J. AU - Alt, D. PY - 2005 DA - 2005// TI - The complete genome sequence of Mycobacterium avium subspecies paratuberculosis JO - Proc Natl Acad Sci U S A VL - 102 UR - https://doi.org/10.1073/pnas.0505662102 DO - 10.1073/pnas.0505662102 ID - Li2005 ER - TY - JOUR AU - Arruda, S. AU - Bomfim, G. AU - Knights, R. AU - Huima-Byron, T. AU - Riley, L. W. PY - 1993 DA - 1993// TI - Cloning of an M. tuberculosis DNA fragment associated with entry and survival inside cells JO - Science VL - 261 UR - https://doi.org/10.1126/science.8367727 DO - 10.1126/science.8367727 ID - Arruda1993 ER - TY - JOUR AU - Casali, N. AU - Riley, L. W. PY - 2007 DA - 2007// TI - A phylogenomic analysis of the Actinomycetales mce operons JO - BMC Genomics VL - 8 UR - https://doi.org/10.1186/1471-2164-8-60 DO - 10.1186/1471-2164-8-60 ID - Casali2007 ER - TY - JOUR AU - Voss, J. J. AU - Rutter, K. AU - Schroeder, B. G. AU - Su, H. AU - Zhu, Y. AU - Barry, C. E. PY - 2000 DA - 2000// TI - The salicylate-derived mycobactin siderophores of Mycobacterium tuberculosis are essential for growth in macrophages JO - Proc Natl Acad Sci U S A VL - 97 UR - https://doi.org/10.1073/pnas.97.3.1252 DO - 10.1073/pnas.97.3.1252 ID - Voss2000 ER - TY - JOUR AU - McMahon, M. D. AU - Rush, J. S. AU - Thomas, M. G. PY - 2012 DA - 2012// TI - Analyses of MbtB, MbtE, and MbtF suggest revisions to the mycobactin biosynthesis pathway in Mycobacterium tuberculosis JO - J Bacteriol VL - 194 UR - https://doi.org/10.1128/JB.00088-12 DO - 10.1128/JB.00088-12 ID - McMahon2012 ER - TY - JOUR AU - Janagama, H. K. AU - Senthilkumar, T. M. AU - Bannantine, J. P. AU - Rodriguez, G. M. AU - Smith, I. AU - Paustian, M. L. PY - 2009 DA - 2009// TI - Identification and functional characterization of the iron-dependent regulator (IdeR) of Mycobacterium avium subsp. paratuberculosis JO - Microbiology VL - 155 UR - https://doi.org/10.1099/mic.0.031948-0 DO - 10.1099/mic.0.031948-0 ID - Janagama2009 ER - TY - JOUR AU - Lechner, M. AU - Findeiss, S. AU - Steiner, L. AU - Marz, M. AU - Stadler, P. F. AU - Prohaska, S. J. PY - 2011 DA - 2011// TI - Proteinortho: detection of (co-)orthologs in large-scale analysis JO - BMC Bioinformatics VL - 12 UR - https://doi.org/10.1186/1471-2105-12-124 DO - 10.1186/1471-2105-12-124 ID - Lechner2011 ER - TY - JOUR AU - Quadri, L. E. AU - Sello, J. AU - Keating, T. A. AU - Weinreb, P. H. AU - Walsh, C. T. PY - 1998 DA - 1998// TI - Identification of a Mycobacterium tuberculosis gene cluster encoding the biosynthetic enzymes for assembly of the virulence-conferring siderophore mycobactin JO - Chem Biol VL - 5 UR - https://doi.org/10.1016/S1074-5521(98)90291-5 DO - 10.1016/S1074-5521(98)90291-5 ID - Quadri1998 ER - TY - JOUR AU - Grant, I. R. PY - 2003 DA - 2003// TI - Mycobacterium paratuberculosis and milk JO - Acta Vet Scand VL - 44 ID - Grant2003 ER - TY - JOUR AU - Griffin, J. E. AU - Gawronski, J. D. AU - Dejesus, M. A. AU - Ioerger, T. R. AU - Akerley, B. J. AU - Sassetti, C. M. PY - 2011 DA - 2011// TI - High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism JO - PLoS Pathog VL - 7 UR - https://doi.org/10.1371/journal.ppat.1002251 DO - 10.1371/journal.ppat.1002251 ID - Griffin2011 ER - TY - JOUR AU - Kruh, N. A. AU - Troudt, J. AU - Izzo, A. AU - Prenni, J. AU - Dobos, K. M. PY - 2010 DA - 2010// TI - Portrait of a pathogen: the Mycobacterium tuberculosis proteome in vivo JO - PLoS One VL - 5 UR - https://doi.org/10.1371/journal.pone.0013938 DO - 10.1371/journal.pone.0013938 ID - Kruh2010 ER - TY - JOUR AU - Lamont, E. A. AU - Xu, W. W. AU - Sreevatsan, S. PY - 2013 DA - 2013// TI - Host-Mycobacterium avium subsp. paratuberculosis interactome reveals a novel iron assimilation mechanism linked to nitric oxide stress during early infection JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-694 DO - 10.1186/1471-2164-14-694 ID - Lamont2013 ER - TY - JOUR AU - Deb, R. AU - Goswami, P. P. PY - 2010 DA - 2010// TI - Expression of a gene encoding 34.9 kDa PPE antigen of Mycobacterium avium subsp. paratuberculosis in E. coli JO - Mol Biol Int VL - 2010 UR - https://doi.org/10.4061/2010/628153 DO - 10.4061/2010/628153 ID - Deb2010 ER - TY - JOUR AU - Ratledge, C. AU - Dover, L. G. PY - 2000 DA - 2000// TI - Iron metabolism in pathogenic bacteria JO - Annu Rev Microbiol VL - 54 UR - https://doi.org/10.1146/annurev.micro.54.1.881 DO - 10.1146/annurev.micro.54.1.881 ID - Ratledge2000 ER - TY - JOUR AU - Strong, M. AU - Sawaya, M. R. AU - Wang, S. AU - Phillips, M. AU - Cascio, D. AU - Eisenberg, D. PY - 2006 DA - 2006// TI - Toward the structural genomics of complexes: crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis JO - Proc Natl Acad Sci U S A VL - 103 UR - https://doi.org/10.1073/pnas.0602606103 DO - 10.1073/pnas.0602606103 ID - Strong2006 ER - TY - JOUR AU - Rodriguez, G. M. AU - Voskuil, M. I. AU - Gold, B. AU - Schoolnik, G. K. AU - Smith, I. PY - 2002 DA - 2002// TI - ideR, An essential gene in Mycobacterium tuberculosis: role of IdeR in iron-dependent gene expression, iron metabolism, and oxidative stress response JO - Infect Immun VL - 70 UR - https://doi.org/10.1128/IAI.70.7.3371-3381.2002 DO - 10.1128/IAI.70.7.3371-3381.2002 ID - Rodriguez2002 ER - TY - JOUR AU - Rodriguez, G. M. AU - Smith, I. PY - 2006 DA - 2006// TI - Identification of an ABC transporter required for iron acquisition and virulence in Mycobacterium tuberculosis JO - J Bacteriol VL - 188 UR - https://doi.org/10.1128/JB.188.2.424-430.2006 DO - 10.1128/JB.188.2.424-430.2006 ID - Rodriguez2006 ER - TY - JOUR AU - Farhana, A. AU - Kumar, S. AU - Rathore, S. S. AU - Ghosh, P. C. AU - Ehtesham, N. Z. AU - Tyagi, A. K. PY - 2008 DA - 2008// TI - Mechanistic insights into a novel exporter-importer system of Mycobacterium tuberculosis unravel its role in trafficking of iron JO - PLoS One VL - 3 UR - https://doi.org/10.1371/journal.pone.0002087 DO - 10.1371/journal.pone.0002087 ID - Farhana2008 ER - TY - JOUR AU - Ryndak, M. B. AU - Wang, S. AU - Smith, I. AU - Rodriguez, G. M. PY - 2010 DA - 2010// TI - The Mycobacterium tuberculosis high-affinity iron importer, IrtA, contains an FAD-binding domain JO - J Bacteriol VL - 192 UR - https://doi.org/10.1128/JB.00223-09 DO - 10.1128/JB.00223-09 ID - Ryndak2010 ER - TY - JOUR AU - Bull, T. J. AU - Schock, A. AU - Sharp, J. M. AU - Greene, M. AU - McKendrick, I. J. AU - Sales, J. PY - 2013 DA - 2013// TI - Genomic variations associated with attenuation in Mycobacterium avium subsp. paratuberculosis vaccine strains JO - BMC Microbiol VL - 13 UR - https://doi.org/10.1186/1471-2180-13-11 DO - 10.1186/1471-2180-13-11 ID - Bull2013 ER - TY - JOUR AU - Saxegaard, F. AU - Fodstad, F. H. PY - 1985 DA - 1985// TI - Control of paratuberculosis (Johne’s disease) in goats by vaccination JO - Vet Rec VL - 116 UR - https://doi.org/10.1136/vr.116.16.439 DO - 10.1136/vr.116.16.439 ID - Saxegaard1985 ER - TY - JOUR AU - Merkal, R. S. AU - Curran, B. J. PY - 1974 DA - 1974// TI - Growth and metabolic characteristics of Mycobacterium paratuberculosis JO - Appl Microbiol VL - 28 ID - Merkal1974 ER - TY - JOUR AU - Aduriz, J. J. AU - Juste, R. A. AU - Cortabarria, N. PY - 1995 DA - 1995// TI - Lack of mycobactin dependence of mycobacteria isolated on Middlebrook 7H11 from clinical cases of ovine paratuberculosis JO - Vet Microbiol VL - 45 UR - https://doi.org/10.1016/0378-1135(95)00037-B DO - 10.1016/0378-1135(95)00037-B ID - Aduriz1995 ER - TY - JOUR AU - Reddy, P. V. AU - Puri, R. V. AU - Chauhan, P. AU - Kar, R. AU - Rohilla, A. AU - Khera, A. PY - 2013 DA - 2013// TI - Disruption of mycobactin biosynthesis leads to attenuation of Mycobacterium tuberculosis for growth and virulence JO - J Infect Dis VL - 208 UR - https://doi.org/10.1093/infdis/jit250 DO - 10.1093/infdis/jit250 ID - Reddy2013 ER - TY - JOUR AU - Pandey, R. AU - Rodriguez, G. M. PY - 2014 DA - 2014// TI - IdeR is required for iron homeostasis and virulence in Mycobacterium tuberculosis JO - Mol Microbiol VL - 91 UR - https://doi.org/10.1111/mmi.12441 DO - 10.1111/mmi.12441 ID - Pandey2014 ER - TY - JOUR AU - Wagner, D. AU - Maser, J. AU - Lai, B. AU - Cai, Z. AU - Barry, C. E. AU - Honer Zu Bentrup, K. PY - 2005 DA - 2005// TI - Elemental analysis of Mycobacterium avium-, Mycobacterium tuberculosis-, and Mycobacterium smegmatis-containing phagosomes indicates pathogen-induced microenvironments within the host cell’s endosomal system JO - J Immunol VL - 174 UR - https://doi.org/10.4049/jimmunol.174.3.1491 DO - 10.4049/jimmunol.174.3.1491 ID - Wagner2005 ER - TY - JOUR AU - Felnagle, E. A. AU - Barkei, J. J. AU - Park, H. AU - Podevels, A. M. AU - McMahon, M. D. AU - Drott, D. W. PY - 2010 DA - 2010// TI - MbtH-like proteins as integral components of bacterial nonribosomal peptide synthetases JO - Biochemistry VL - 49 UR - https://doi.org/10.1021/bi1012854 DO - 10.1021/bi1012854 ID - Felnagle2010 ER - TY - JOUR AU - Imker, H. J. AU - Krahn, D. AU - Clerc, J. AU - Kaiser, M. AU - Walsh, C. T. PY - 2010 DA - 2010// TI - N-acylation during glidobactin biosynthesis by the tridomain nonribosomal peptide synthetase module GlbF JO - Chem Biol VL - 17 UR - https://doi.org/10.1016/j.chembiol.2010.08.007 DO - 10.1016/j.chembiol.2010.08.007 ID - Imker2010 ER - TY - JOUR AU - Lautru, S. AU - Oves-Costales, D. AU - Pernodet, J. L. AU - Challis, G. L. PY - 2007 DA - 2007// TI - MbtH-like protein-mediated cross-talk between non-ribosomal peptide antibiotic and siderophore biosynthetic pathways in Streptomyces coelicolor M145 JO - Microbiology VL - 153 UR - https://doi.org/10.1099/mic.0.2006/003145-0 DO - 10.1099/mic.0.2006/003145-0 ID - Lautru2007 ER - TY - JOUR AU - Kumar, A. AU - Chandolia, A. AU - Chaudhry, U. AU - Brahmachari, V. AU - Bose, M. PY - 2005 DA - 2005// TI - Comparison of mammalian cell entry operons of mycobacteria: in silico analysis and expression profiling JO - FEMS Immunol Med Microbiol VL - 43 UR - https://doi.org/10.1016/j.femsim.2004.08.013 DO - 10.1016/j.femsim.2004.08.013 ID - Kumar2005 ER - TY - JOUR AU - Santangelo, M. P. AU - Blanco, F. C. AU - Bianco, M. V. AU - Klepp, L. I. AU - Zabal, O. AU - Cataldi, A. A. PY - 2008 DA - 2008// TI - Study of the role of Mce3R on the transcription of mce genes of Mycobacterium tuberculosis JO - BMC Microbiol VL - 8 UR - https://doi.org/10.1186/1471-2180-8-38 DO - 10.1186/1471-2180-8-38 ID - Santangelo2008 ER - TY - JOUR AU - Gioffre, A. AU - Infante, E. AU - Aguilar, D. AU - Santangelo, M. P. AU - Klepp, L. AU - Amadio, A. PY - 2005 DA - 2005// TI - Mutation in mce operons attenuates Mycobacterium tuberculosis virulence JO - Microbes Infect VL - 7 UR - https://doi.org/10.1016/j.micinf.2004.11.007 DO - 10.1016/j.micinf.2004.11.007 ID - Gioffre2005 ER - TY - JOUR AU - Klepp, L. I. AU - Forrellad, M. A. AU - Osella, A. V. AU - Blanco, F. C. AU - Stella, E. J. AU - Bianco, M. V. PY - 2012 DA - 2012// TI - Impact of the deletion of the six mce operons in Mycobacterium smegmatis JO - Microbes Infect VL - 14 UR - https://doi.org/10.1016/j.micinf.2012.01.007 DO - 10.1016/j.micinf.2012.01.007 ID - Klepp2012 ER - TY - JOUR AU - Bull, T. J. AU - McMinn, E. J. AU - Sidi-Boumedine, K. AU - Skull, A. AU - Durkin, D. AU - Neild, P. PY - 2003 DA - 2003// TI - Detection and verification of Mycobacterium avium subsp. paratuberculosis in fresh ileocolonic mucosal biopsy specimens from individuals with and without Crohn’s disease JO - J Clin Microbiol VL - 41 UR - https://doi.org/10.1128/JCM.41.7.2915-2923.2003 DO - 10.1128/JCM.41.7.2915-2923.2003 ID - Bull2003 ER - TY - JOUR AU - Zerbino, D. R. AU - Birney, E. PY - 2008 DA - 2008// TI - Velvet: algorithms for de novo short read assembly using de Bruijn graphs JO - Genome Res VL - 18 UR - https://doi.org/10.1101/gr.074492.107 DO - 10.1101/gr.074492.107 ID - Zerbino2008 ER - TY - JOUR AU - Tang, Z. AU - Wu, H. AU - Cort, J. R. AU - Buchko, G. W. AU - Zhang, Y. AU - Shao, Y. PY - 2010 DA - 2010// TI - Constraint of DNA on functionalized graphene improves its biostability and specificity JO - Small VL - 6 UR - https://doi.org/10.1002/smll.201000024 DO - 10.1002/smll.201000024 ID - Tang2010 ER - TY - JOUR AU - Aziz, R. K. AU - Bartels, D. AU - Best, A. A. AU - DeJongh, M. AU - Disz, T. AU - Edwards, R. A. PY - 2008 DA - 2008// TI - The RAST Server: rapid annotations using subsystems technology JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-75 DO - 10.1186/1471-2164-9-75 ID - Aziz2008 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Finn, R. D. AU - Clements, J. AU - Eddy, S. R. PY - 2011 DA - 2011// TI - HMMER web server: interactive sequence similarity searching JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkr367 DO - 10.1093/nar/gkr367 ID - Finn2011 ER - TY - JOUR AU - Punta, M. AU - Coggill, P. C. AU - Eberhardt, R. Y. AU - Mistry, J. AU - Tate, J. AU - Boursnell, C. PY - 2012 DA - 2012// TI - The Pfam protein families database JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1065 DO - 10.1093/nar/gkr1065 ID - Punta2012 ER - TY - JOUR AU - Medema, M. H. AU - Blin, K. AU - Cimermancic, P. AU - Jager, V. AU - Zakrzewski, P. AU - Fischbach, M. A. PY - 2011 DA - 2011// TI - antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkr466 DO - 10.1093/nar/gkr466 ID - Medema2011 ER -