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Table 2 Overall genome features of PCN033 and PCN061 strains

From: Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033

Characteristic

PCN033

PCN061

Serogroup

O11

O9

Phylogenetic group

D

A

Chromosome size (bp)

4,987,958

4,603,777

GC (%)

50.7

50.8

Chromosome genes (pseudogenes)

4923 (88)

4586 (123)

tRNA number

85

86

rRNA number

22

22

Genomic island (Prophage regions)

29 (6)

12 (2)

Plasmid (bp; gene no.)

PCN033p1 (3,319; 5),

PCN061p1 (2,014; 6),

 

PCN033p2 (4,086; 5),

PCN061p2 (5,754; 13),

 

PCN033p3 (161,511; 241)

PCN061p3 (6,222; 14),

  

PCN061p4 (34,692; 50),

  

PCN061p5 (103,644; 142),

  

PCN061p6 (145,722; 166)