Table 3 Disease resistance-related miRNAs from P. szechuanica and target gene functional annotations

miR1444

Potri.011G047300.1,Potri.011G108200.1,Potri.011G108300.1,Potri.001G387900.1,Potri.001G388100.1,Potri.001G388300.1,Potri.001G388400.1,Potri.001G388800.1,Potri.001G388800.2,Potri.001G388900.1,Potri.T061900.1,Potri.T062100.1,Potri.T062200.1

polyphenol oxidase

miR2118

Potri.T003600.1,Potri.T003900.1,Potri.T004100.2,Potri.T045200.1,Potri.T004200.1,Potri.018G136300.1,Potri.T014600.1,Potri.T012900.1

disease resistance protein RPS2

disease resistance protein RPS5

Potri.T004100.1,Potri.005G041100.2,Potri.005G041300.1,Potri.005G041100.1,Potri.005G042400.2,Potri.005G042400.1,Potri.005G042900.1,Potri.T016200.1,Potri.T016200.2

disease resistance protein RPS2

Potri.T068700.1,Potri.011G011900.1,Potri.011G013800.1

disease resistance protein RPM1

Potri.011G013100.1,Potri.011G015300.1

disease resistance protein RPM1,

disease resistance protein RPS2

Potri.008G220200.1,Potri.008G220200.2

disease resistance protein RPM1

disease resistance protein RPS5

miR394

Potri.018G095700.1,Potri.018G095700.2

glycerol kinase

miR397

Potri.010G183600.1,Potri.010G183600.2,Potri.009G034500.1,Potri.009G042500.1,Potri.009G102700.1,Potri.009G156600.1,Potri.009G156800.1,Potri.004G156400.2,Potri.004G156400.1,Potri.011G120200.1,Potri.011G120300.1,Potri.006G087100.1,Potri.006G094100.1,Potri.006G096900.1,Potri.006G097000.1,Potri.006G097100.1,Potri.016G106000.1,Potri.016G107500.1,Potri.016G112000.2,Potri.016G112000.1,Potri.016G112100.1,Potri.001G054600.1,Potri.001G184300.1,Potri.001G248700.1,Potri.001G401100.1,Potri.001G401300.1

L-ascorbate oxidase

miR472

Potri.T003600.1,Potri.T003900.1,Potri.T004100.2,Potri.T004200.1,Potri.T045200.1,Potri.T012900.1,Potri.018G136300.1,Potri.T014600.1

disease resistance protein RPS2

disease resistance protein RPS5

Potri.T068700.1,Potri.011G013800.1

disease resistance protein RPM1

Potri.011G013100.1,Potri.011G015300.1

disease resistance protein RPM1

disease resistance protein RPS2

Potri.T016200.1,Potri.T016200.2,Potri.T004100.1

disease resistance protein RPS2

miR482

Potri.017G015300.2,Potri.017G015300.1,Potri.017G015600.2,Potri.017G015600.4,Potri.017G015600.3,Potri.017G015600.1,Potri.004G196100.1,Potri.003G199100.1,Potri.003G199600.1,Potri.003G200800.1

disease resistance protein RPM1

Potri.001G427700.2,Potri.001G427700.1,Potri.001G432200.1

disease resistance protein RPS2

Potri.001G432200.1

disease resistance protein RPS5

miR530

Potri.014G099700.1

transcription factor MYC2

novel_mir_11

Potri.004G169800.1,Potri.004G169800.2,Potri.004G170300.1,Potri.003G017200.1,Potri.003G026900.1,Potri.018G136100.1,Potri.014G001900.1,Potri.014G002000.1,Potri.014G002200.1,Potri.014G002300.1,Potri.014G003200.2,Potri.014G003200.1,Potri.014G003400.1,Potri.014G003600.2,Potri.014G003600.1,Potri.014G005600.2,Potri.014G005600.1,Potri.014G007600.1,Potri.014G009300.1,Potri.014G009400.1,Potri.014G009400.2,Potri.014G009600.1,Potri.014G010600.1,Potri.014G010700.1,Potri.014G010900.1,Potri.014G012000.1

disease resistance protein RPM1

novel_mir_118

Potri.006G047300.1,Potri.006G047300.2

calcium-binding protein CML

novel_mir_166

Potri.013G098000.1,Potri.013G097900.1

disease resistance protein RPM1

novel_mir_191

Potri.018G035100.1

LRR receptor-like serine/threonine-protein kinase FLS2

Potri.019G103900.1,Potri.019G103900.2,Potri.019G103900.3

serine/threonine-protein kinase PBS1

Potri.009G115200.1,Potri.009G115200.2

brassinosteroid insensitive 1-associated receptor kinase 1

novel_mir_198

Potri.005G031900.1

LRR receptor-like serine/threonine-protein kinase FLS2

novel_mir_244

Potri.017G103500.1,Potri.017G103500.2, Potri.014G063500.1

disease resistance protein RPM1

Potri.014G064300.1

disease resistance protein RPM1

disease resistance protein RPS2

disease resistance protein RPS5

novel_mir_248

Potri.T049000.1

disease resistance protein RPM1

disease resistance protein RPS2

novel_mir_206

Potri.012G054700.1,Potri.012G054700.2

chitin elicitor receptor kinase 1

novel_mir_211

Potri.017G127200.1,Potri.017G127800.1,Potri.017G128000.2,Potri.017G128000.1,Potri.017G133600.1,Potri.017G133700.1,Potri.017G136400.1,Potri.017G136700.1,Potri.017G136900.1,Potri.017G138100.1,Potri.018G080500.1,Potri.018G080700.1,Potri.T105500.1,Potri.001G033100.1,Potri.T096100.1

disease resistance protein RPM1

novel_mir_222

Potri.013G108200.2 Potri.013G108200.1

cyclic nucleotide gated channel, other eukaryote

novel_mir_25

Potri.012G054700.1,Potri.012G054700.2

chitin elicitor receptor kinase 1

novel_mir_250

Potri.019G018800.1,Potri.T068600.1,Potri.011G008600.1,Potri.011G011600.1,Potri.011G060600.1,Potri.011G008700.1,Potri.011G013400.1,Potri.011G015400.1,Potri.006G269900.1

disease resistance protein RPM1

Potri.T037600.1,Potri.T039900.1,Potri.T039100.1,Potri.T039300.1,Potri.006G270000.1

disease resistance protein RPS2

disease resistance protein RPM1

Potri.T067500.1

disease resistance protein RPM1

disease resistance protein RPS5

Potri.T112200.1,Potri.001G363400.1

disease resistance protein RPM1

disease resistance protein RPS2

novel_mir_270

Potri.005G231100.2

extracellular signal-regulated kinase 1/2

novel_mir_290

Potri.001G361600.1,Potri.001G361600.2, Potri.001G361600.3

WRKY transcription factor 33

novel_mir_357

Potri.T003600.1,Potri.T044800.1,Potri.T045300.2,Potri.T045300.2,Potri.T045300.1,Potri.T045300.1,Potri.T024700.1,Potri.T024900.1,Potri.T025100.1,Potri.T025800.1,Potri.T025800.1,Potri.T026400.1,Potri.T026800.1,Potri.T026700.1,Potri.T026900.1,Potri.T027200.1,Potri.T027500.1,Potri.T027300.1,Potri.T027700.1,Potri.T028100.1,Potri.T028300.1,Potri.019G022800.1,Potri.019G020500.1,Potri.019G020200.2,Potri.019G020200.1,Potri.019G014500.1,Potri.018G137900.1,Potri.018G136500.1,Potri.018G135600.1,Potri.018G136700.1,Potri.T015900.2,Potri.T015900.1,Potri.T013900.1,Potri.T013800.1,Potri.T013300.3,Potri.T013300.2,Potri.T053000.1,Potri.001G406000.1,Potri.T012000.1,Potri.T013300.1,Potri.T014600.1

disease resistance protein RPS2

disease resistance protein RPS5

Potri.T045000.1,Potri.T046000.1,Potri.T025300.1,Potri.T026200.1,Potri.T026600.1,Potri.011G127300.2,Potri.T028700.1,Potri.T028000.1,Potri.011G127300.1,Potri.T014900.1,Potri.019G002800.1,Potri.019G002800.2

disease resistance protein RPS2

novel_mir_368

Potri.011G104700.1,Potri.011G104900.1,Potri.T085700.2,Potri.T085700.3,Potri.T085700.1,Potri.T086100.3,Potri.T086100.1,Potri.T086100.2

LRR receptor-like serine/threonine-protein kinase FLS2

novel_mir_38

Potri.007G128600.1

calcium-binding protein CML

novel_mir_387

Potri.004G025200.1,Potri.004G026100.1

serine/threonine-protein kinase PBS1

novel_mir_403

Potri.T001600.1

disease resistance protein RPM1

novel_mir_93

Potri.003G041600.1

LRR receptor-like serine/threonine-protein kinase FLS2