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Table 2 Genes involved in carotenoid/apocarotenoid pathway

From: Comprehensive transcriptome analysis of Crocus sativus for discovery and expression of genes involved in apocarotenoid biosynthesis

 

TMM

RPKM

Component number

Annotation

Abbreviation

Exp. in stigma

Exp. in flower

Exp. in stigma

Exp. in flower

comp30738_c0_seq8

phytoene synthase

PSY

10.49

1.17

11.9

1.4

comp22417_c0_seq1

phytoene desaturase

PDS

12.48

1.50

26.5

3.3

comp31950_c0_seq2

acis-zeta-carotene isomerase

ZISO

4.17

0.59

4.6

0.7

comp33968_c0_seq1

azeta-carotene desaturase

ZDS

324.18

139.87

88.2

40.1

comp33960_c1_seq3

acarotenoid isomerase protein

CRTISO

26.02

2.28

23.0

2.1

comp16731_c1_seq1

lycopene beta-cyclase

β-LYC

1.64

0.46

2.7

0.8

comp17458_c0_seq1

alycopene epsilon-cyclase

ε-LYC

0.89

0.15

2.5

0.5

comp34653_c0_seq16

beta-carotene hydroxylase

BCH

16.81

3.34

9.6

2.0

comp32667_c0_seq2

9-cis-epoxycarotenoid dioxygenase

NCED

1.62

4.35

1.1

3.2

comp21047_c1_seq1

carotenoid cleavage dioxygenase 2

CCD2

2.62

0.15

6.1

0.4

comp8137_c0_seq1

carotenoid cleavage dioxygenase 7

CCD7

0.42

0.00

1.8

0.0

comp8446_c0_seq1

carotenoid cleavage dioxygenase 8b

CCD8b

0.05

0.38

0.1

1.2

comp29644_c0_seq1

carotenoid cleavage dioxygenase 4c

CCD4c

3.83

2.65

5.4

4.0

comp33382_c0_seq3

chromoplast carotenoid cleavage dioxygenase 4b

CCD4b

245.25

27.29

111.6

13.1

comp33944_c0_seq1

aGlucosidase

GS

87.77

145.10

80.1

143.3

comp27519_c0_seq1

acarotenoid-associated protein

CAP

141.53

59.66

105.3

46.8

comp33950_c0_seq1

Carotenoid 9,10 (9′,10′)-cleavage dioxygenase

CCD1

66.14

19.32

67.4

20.8

comp33382_c0_seq4

Zeaxanthin 7,8 (7′,8′)-cleavage dioxygenase

ZCD

76.17

14.24

29.7

5.9

comp33173_c0_seq2

aUDP-glycosyltransferase

UGT

208.34

41.99

8.3

1.5

comp31026_c0_seq1

azeaxanthin epoxidase

ZEP

27.48

12.56

23.8

11.5

comp29444_c0_seq6

aviolaxanthin de-epoxidase

VDE

8.24

2.79

9.8

3.5

  1. aGenes identified first time in the present study