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Table 2 Stress response-related genes up-regulated by progressive depletion of Pkh

From: Depletion of yeast PDK1 orthologs triggers a stress-like transcriptional response

Gene

UPR

Oxidative

Heat shock

Description

APJ1

X

 

X

Chaperone of the HSP40 family.

CPR6

X

 

X

Peptidyl-prolyl cis-trans isomerase (cyclophilin).

CTA1

 

X

 

Catalase A.

GAC1

  

X

Regulatory subunit for Glc7p type-1 protein phosphatase (PP1).

GAD1

 

X

 

Glutamate decarboxylase.

GRE1

 

X

X

Hydrophilin essential in desiccation-rehydration process.

GRE3

  

X

Aldose reductase involved .

HSP12

 

X

X

Plasma membrane protein that protects membranes from desiccation.

HSP26

Xa

  

Small heat shock protein (sHSP) with chaperone activity.

HSP31

X

  

Methylglyoxalase that converts methylglyoxal to D-lactate.

HSP33

X

  

Possible chaperone and cysteine protease.

HSP42

Xa

  

Small heat shock protein (sHSP) with chaperone activity.

HSP78

X

  

Oligomeric mitochondrial matrix chaperone.

HSP82

Xa

  

Hsp90 chaperone.

HSP104

Xa

 

X

Disaggregase.

MCR1

 

X

 

Mitochondrial NADH-cytochrome b5 reductase.

MDJ1

X

  

Co-chaperone that stimulates HSP70 protein Ssc1p ATPase activity.

ORM2

X

  

Protein that mediates sphingolipid homeostasis.

OXR1

 

X

 

Protein of unknown function required for oxidative damage resistance.

PRX1

 

X

 

Mitochondrial peroxiredoxin with thioredoxin peroxidase activity.

SNQ2

 

X

 

Plasma membrane ATP-binding cassette (ABC) transporter.

SOD2

 

X

 

Mitochondrial manganese superoxide dismutase.

SSA3

X

  

ATPase involved in protein folding and the response to stress.

SSA4

Xa

  

Heat shock protein that is highly induced upon stress.

SSE2

Xa

 

X

Member of the heat shock protein 70 (HSP70) family.

TSA2

 

X

 

Stress inducible cytoplasmic thioredoxin peroxidase.

UBC5

Xa

  

Ubiquitin-conjugating enzyme.

UGA2

 

X

 

Succinate semialdehyde dehydrogenase.

  1. Reported involvement in the UPR and responses to oxidative and heat stresses of the set of genes up-regulated by depletion of Pkh, according to the FunCatDB
  2. UPR: 32.01.07 (Unfolded protein response); oxidative: 32.01.01 (oxidative stress response); Heat shock: 32.01.05 (heat shock response). athe up-regulation of these genes has been described as independent of Hac1 [75]