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Table 1 Genetic features of oomycete genomes

From: Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora

  Pl. halstedii Al. laibachii Hy. arabidopsidis Ph. capsici Ph. infestans Ph. ramorum Ph. sojae Py. ultimum Sa. parasitica
Assembled genome size (Mb) 75.32 32.76 78.89 64.02 228.54 66.65 82.6 44.91 53.09
N50 scaffold size (Mb) 1.54 0.06 0.33 0.7 1.58 0.3 7.6 0.83 0.28
N50 count 16 130 70 29 38 63 4 19 46
Longest scaffold size (Mb) 3.42 0.58 1.23 2.71 6.92 1.24 13.39 1.82 1.61
Number of scaffolds 3,162 3,827 3,044 917 4,921 2,576 83 975 1,442
Genes 15,469 13,804 14,321 19,805 17,787 16,066 26,584 15,322 20,088
CDS 40,334 43,014 28,165 42,673 49,146 40,639 63,242 39,949 79,762
Gaps (N %) 11.32 0 10.22 12.47 16.81 18.35 3.96 4.72 9.33
Repeat elements (%) 39 % 22 % 43 % 19 % 74 % 28 % 39 % 7 % 40 %
Secretomea 631 (631) 262 (672) 649 (1054) 1141 (1176) 1501 (1588) 1339 (1523) 1978 (1867) 926 (843) 1256 (1255)
Genome          
 AT % 54.70 55.65 52.78 49.57 49.03 46.14 45.39 47.69 41.54
 GC % 45.29 44.34 47.21 50.42 50.96 53.85 54.60 52.30  
Coding sequences          
 AT % 54.02 54.29 46.87 46.62 45.99 41.95 41.55 43.4 37.67
 GC % 45.96 45.71 53.11 53.37 54.02 58.05 58.45 56.6 62.33
CEGMA          
 Complete KOG mapping (%) 97.18 % 93.40 % 95.39 % 98.00 % 96.76 % 96.44 % 98.02 % 97.13 % 97.20 %
 Partial KOG mapping (%) 98.41 % 95.94 % 98.10 % 98.83 % 98.03 % 98.45 % 99.24 % 97.58 % 98.79 %
  1. aNumbers in bracket represent the published secretome size