Table 5 The gene candidates found in As_PG that may be involved in p-oxidation processes
genelD | GenBank accession | As PG FPKM | As AB FPKM | Swissprot-annotation | ko_definition |
|---|---|---|---|---|---|
acyl-CoA dehydrogenase | Â | Â | Â | Â | Â |
 Unigene5337_All | KJ622076 | 2.49 | 0.93 | Short-chain specific acyl-CoA dehydrogenase | butyryl-CoA dehydrogenase[EC:1.3.8.1] |
 Unigenel8315_All | KJ622077 | 4.35 | 3.26 | Short-chain specific acyl-CoA dehydrogenase | butyryl-CoA dehydrogenase[EC:1.3.8.1] |
 CL3917.Contigl_All | KJ622078 | 8.02 | 14.14 | Short-chain specific acyl-CoA dehydrogenase | butyryl-CoA dehydrogenase[EC:1.3.8.1] |
 Unigenel5571_All | KJ622079 | 24.39 | 67.70 | Short/branched chain specific acyl-CoA dehydrogenase | short/branched chain acyl-CoA dehydrogenase [EC:1.3.99.12] |
 CL 1315 .Contig2_All | KJ622080 | 29.09 | 40.69 | Probable medium-chain specific acyl-CoA dehydrogenase | acyl-CoAdehydrogenase [EC: 1.3.99.3] |
 Unigene4168_All | KJ622081 | 4.04 | 3.43 | Acyl-CoA dehydrogenase family member 9 | Acyl-CoA dehydrogenase family member 9 [EC:1.3.99.-] |
 CL252.Contigl_All | KJ622082 | 10.03 | 7.93 | Very long-chain specific acyl-CoA dehydrogenase | Very long chain acyl-CoA dehydrogenase [EC:1.3.99.-] |
 CL622.Contig4_All | KJ579211 | 77.52 | 107.57 | Trifunctional enzyme subunit beta | acetyl-CoAacyltransferase [EC:2.3.1.16] |
 Unigene7769_All | KJ622083 | 3.29 | 2.51 | Isovaleryl-CoA dehydrogenase | Isovaleryl-CoA dehydrogenase [EC:1.3.8.4] |
 Unigene9593_All | KJ622084 | 8.77 | 9.31 | Isovaleryl-CoA dehydrogenase | Isovaleryl-CoA dehydrogenase [EC:1.3.8.4] |
acyl-CoA oxidase | Â | Â | Â | Â | Â |
 CL3960.Contigl_All | KJ622085 | 16.52 | 17.33 | Probable peroxisomal acyl-CoA oxidase | acyl-CoA oxidase [EC:1.3.3.6] |
 CL4327.Contigl_All | KJ622086 | 3.85 | 4.30 | Peroxisomal acyl-CoA oxidase | acyl-CoA oxidase [EC:1.3.3.6] |
 CL6898.Contigl_All | KJ622087 | 5.75 | 11.79 | Probable peroxisomal acyl-CoA oxidase 1 | acyl-CoA oxidase [EC:1.3.3.6] |
 CL7062.Contigl_All | KJ622088 | 14.54 | 18.14 | Peroxisomal acyl-CoA oxidase 3 | acyl-CoA oxidase [EC:1.3.3.6] |
 Unigenel 9521_All | KJ622089 | 29.25 | 23.07 | Probable peroxisomal acyl-CoA oxidase 1 | acyl-CoA oxidase [EC:1.3.3.6] |
 Unigene26088_All | KJ622090 | 2.29 | 0.68 | Peroxisomal acyl-CoA oxidase 1 | acyl-CoA oxidase [EC:1.3.3.6] |
 Unigene33961_All | KJ622091 | 3.46 | 2.66 | Probable peroxisomal acyl-CoA oxidase 1 | acyl-CoA oxidase [EC:1.3.3.6] |
 Unigene4386_All | KJ622092 | 1.74 | 1.78 | Probable peroxisomal acyl-CoA oxidase 1 | acyl-CoA oxidase [EC:1.3.3.6] |
 Unigene5059_All | KJ622093 | 1.92 | 1.13 | Peroxisomal acyl-CoA oxidase 1 | acyl-CoA oxidase [EC:1.3.3.6] |
 Unigene6715_A11 | KJ622094 | 386.08 | 4.64 | Probable peroxisomal acyl-CoA oxidase 1 | acyl-CoA oxidase [EC:1.3.3.6] |
enoyl-CoA hydratase | Â | Â | Â | Â | Â |
 CL1656.Contigl_All | KJ622095 | 16.69 | 23.69 | Methylglutaconyl-CoA hydratase | Methylglutaconyl-CoA hydratase [EC:4.2.1.18] |
 CL2503.Contigl_All | KJ622096 | 8.85 | 1.87 | Probable enoyl-CoA hydratase | enoyl-CoA hydratase [EC:4.2.1.17] |
 CL2595.Contigl_All | KJ622097 | 122.91 | 142.29 | Trifunctional enzyme subunit alpha | enoyl-CoA hydratase [EC:4.2.1.17] |
 Unigenel4514_All | KJ622098 | 4.15 | 4.35 | 3-hydroxyisobutyryl-CoA hydrolase | 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4] |
 Unigenel7624_All | KJ622099 | 73.15 | 87.01 | Enoyl-CoA hydratase | enoyl-CoA hydratase [EC:4.2.1.17] |
 Unigene6308_All | KJ622100 | 5.00 | 5.89 | Enoyl-CoA hydratase domain-containing protein 3 | enoyl-CoA hydratase [EC:4.2.1.17] |
L-3-hydroxyacyl-CoA dehydrogenase | Â | Â | Â | Â | Â |
 Unigenel2153_All | KJ622101 | 11.64 | 1.60 | 3-hydroxyacyl-CoA dehydrogenase | 3-hydroxyacyl-CoA dehydrogenase [EC1.1.1.35] |
 Unigenel5615_All | KJ622102 | 8.46 | 8.38 | 3-hydroxyacyl-CoA dehydrogenase | 3-hydroxyacyl-CoA dehydrogenase [EC1.1.1.35] |
 Unigenel7583_All | KJ622103 | 174.80 | 83.79 | Peroxisomal multifunctional enzyme | 3-hydroxyacyl-CoA dehydrogenase [EC1.1.1.35] |
 Unigenel9554_All | KJ622104 | 103.82 | 78.74 | Flydroxyacyl-CoA dehydrogenase | 3-hydroxyacyl-CoA dehydrogenase [EC1.1.1.35] |
 Unigene8215_All | KJ622105 | 8.18 | 4.22 | Probable 3-hydroxyacyl-CoA dehydrogenase | 3-hydroxyacyl-CoA dehydrogenase [EC1.1.1.35] |
3-ketoacyl-CoA thiolase | Â | Â | Â | Â | Â |
 CL2371.Contigl_All | KJ579207 | 10.01 | 5.43 | 3-ketoacyl-CoA thiolase | acetyl-CoA acyltransferase 2 [EC:2.3.1.16] |
 Unigene21478_A11 | KJ622106 | 4.47 | 0.05 | 3-ketoacyl-CoA thiolase | acetyl-CoA acyltransferase 2 [EC:2.3.1.16] |
 Unigene26739_All | KJ622107 | 3.32 | 0.00 | 3-ketoacyl-CoA thiolase | acetyl-CoA acyltransferase 2 [EC:2.3.1.16] |
 Unigene28250_All | KJ622108 | 122.89 | 42.24 | Trifunctional enzyme subunit beta | acetyl-CoA acyltransferase [EC:2.3.1.16] |
 Unigene30699_All | KJ622109 | 1.19 | 0.76 | 3-ketoacyl-CoA thiolase | acetyl-CoA acyltransferase 2 [EC:2.3.1.16] |
 Unigene5444_All | KJ622110 | 2.35 | 15.28 | 3-ketoacyl-CoA thiolase | acetyl-CoA acyltransferase 2 [EC:2.3.1.16] |
A3,A2-trans-enoyl-CoA isomerase | Â | Â | Â | Â | Â |
 CL3311.Contigl_All | KJ622111 | 24.40 | 35.52 | Enoyl-CoA delta isomerase 1 | 3,2-trans-enoyl-CoAisomerase, mitochondrial [EC:5.3.3.8] |
 Unigene2565_All | KJ622112 | 3.56 | 1.88 | Enoyl-CoA delta isomerase 2 | peroxisomal 3,2-trans-enoyl-CoA isomerase [EC:5.3.3.8] |
Δ3,5 Δ2,4-dienoyl-CoA isomerase |  |  |  |  |  |
 Unigenel6713_All | KJ622113 | 11.43 | 18.26 | Delta(3,5)-Delta(2,4)-dienoy 1-Co A is omerase | delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase [EC:5.3.3.-] |