Table 4 Each T. castaneum chromosome linkage group (ChLG) before and after super scaffolding. The number of sequence scaffolds in the ordered Tcas5.0 ChLG bins and the number of sequence super scaffolds and scaffolds in the Tcas5.2 ChLG bins. The number of sequence scaffolds that were unplaced in Tcas5.0 and placed with a ChLG in Tcas5.2 is also listed
From: Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool
ChLG | Tcas5.0 scaffolds | Unplaced scaffolds | Tcas5.2 super |
|---|---|---|---|
| Â | Â | added in Tcas5.2 | scaffolds |
X | 13 | +2 | 2 |
2 | 18 | +1 | 10 |
3 | 29 | +4 | 20 |
4 | 6 | +2 | 2 |
5 | 17 | +1 | 4 |
6 | 12 | +6 | 6 |
7 | 15 | – | 6 |
8 | 14 | +1 | 8 |
9 | 21 | – | 9 |
10 | 12 | +2 | 10 |
Total | 157 | 19 | 77 |