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Table 1 Dynamics of primary metabolism-related transcriptional responses

From: Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction

Process description (MapMan BIN) No. of genes in BIN NT NahG
1 dpi 3 dpi 4 dpi 5 dpi 7 dpi 1 dpi 3 dpi 4 dpi 5 dpi 7 dpi
Photosynthesis 354   + + -   -   -   -
  Light reaction 208 +   + -   -   -   -
  Light reaction.photosystem II 108 +   + -   -   -   -
  Light reaction.photosystem II.LHCII 25 +   + -   -   -   -
  Light reaction.photosystem II.PSII polypeptide subunits 83 +   + -   -   -   -
  Light reaction.photosystem I 43 +   + -   - + -   -
  Light reaction.photosystem I.Psi polypeptide Subunits 26    + -   - + -   -
  Light reaction.other electron carrier 21 -    - - -   -   -
  Photorespiration 44   +   -   -   - - -
  Calvin cycle 102   +   - - -   - - -
Major cho metabolism 227   + +   +      
  Major cho metabolism.synthesis 97    + - +      
  Major cho metabolism.synthesis.starch 82    + - +      
  Major cho metabolism.synthesis.starch.starch synthase 27      +      -
  Major cho metabolism.synthesis.starch.transporter 23   + +   +      +
  Major cho metabolism.degradation 130   +     +   +   
  Major cho metabolism.degradation.sucrose 58   +     +     +
  Major cho metabolism.degradation.sucrose.invertases 20       + -    +
  Major cho metabolism.degradation.starch 72 +   +   +   + +   
  Major cho metabolism.degradation.starch.starch cleavage 35       +   +   +
Minor cho metabolism 185           
  Minor cho metabolism.trehalose 31       +     -
  Minor cho metabolism.others 75        +    
  Minor cho metabolism.galactose 20   + +        
Glycolysis 106           
  1. Virus-induced changes on the level of process analysis are shown for primary metabolism- related processes (photosynthesis, major and minor sugar metabolism and glycolysis). Results of Gene set enrichment analysis using MapMan ontology at 1, 3, 4, 5 and 7 dpi are presented in potato cv. Désirée (NT) and NahG-Désirée (NahG). Only statistically significant (FDR p-value <0.10) enriched sets of genes are marked as induced (+) or repressed (-) process. dpi – days post inoculation, Process description – according to MapMan gene annotation. No of genes in BIN – number of all genes assigned to the BIN. Blanks denote that a current process was not statistically significantly enriched at a corresponding dpi. Visualization of these results in primary metabolism pathways is presented in Additional file 5