Table 3 Relative importance of features for seedless and seed sites
From: MicroRNA target prediction using thermodynamic and sequence curves
Seedless Sites | Seed Sites | |||
|---|---|---|---|---|
Rank | Feature | Weight | Feature | Weight |
1 | CDS | –0.452 | Site length | –0.591 |
2 | Site length | –0.404 | CDS | –0.436 |
3 | Seed enrichment | 0.364 | A U seed [9] | 0.287 |
4 | A U site [10] | 0.198 | Δ Δ G site [10] | –0.250 |
5 | A U seed [10] | 0.198 | A U seed [10] | 0.235 |
6 | A U seed [9] | 0.192 | Seed enrichment | 0.210 |
7 | 5’ UTR | –0.165 | A U site [9] | 0.208 |
8 | Consv | 0.149 | Δ G seed [9] | –0.195 |
9 | Δ Δ G site [10] | –0.148 | Δ Δ G seed [9] | –0.193 |
10 | Relative site location | –0.141 | Δ Δ G seed [10] | –0.190 |
11 | A U site [9] | 0.134 | Δ Δ G site [9] | –0.187 |
12 | Δ G site [15] | 0.118 | A U site [10] | 0.187 |
13 | Δ G site [19] | 0.116 | Δ G seed [10] | –0.179 |
14 | Δ G site [14] | 0.113 | 5’ UTR | –0.178 |
15 | Δ G site [17] | 0.111 | Seed consv | 0.175 |
16 | Δ G site [16] | 0.098 | Relative site location | –0.154 |
17 | Δ Δ G site [9] | –0.093 | Δ G site [12] | 0.100 |
18 | A U seed [8] | 0.089 | Δ G site [14] | 0.097 |
19 | A U seed [11] | 0.088 | 3’ UTR | –0.089 |
20 | Δ G site [12] | 0.078 | A U seed [3] | 0.088 |