|
SNP
|
rs14916609
|
rs314058619
|
rs316497033
|
rs14491030
|
|---|
|
Chromosome
|
GGA1
|
GGA1
|
GGA3
|
GGA4
|
|
Position (bp)a
|
168,456,799
|
169,930,974
|
23,254,004
|
75,486,534
|
|
EA/AA
|
G/A
|
T/G
|
A/G
|
G/A
|
|
EAF
|
0.41
|
0.47
|
0.21
|
0.06
|
|
FEW
|
beta (SE)b
|
−0.201 (0.051)
|
0.095 (0.047)
|
−0.129 (0.055)
|
0.366 (0.086)
|
|
CPV (%)c
|
1.92
|
0.30
|
0.55
|
1.32
|
|
EW32
|
beta (SE)
|
−0.284 (0.051)
|
0.204 (0.046)
|
−0.132 (0.054)
|
0.601 (0.082)
|
|
CPV (%)
|
3.75
|
2.10
|
0.57
|
3.88
|
|
EW36
|
beta (SE)
|
−0.259 (0.053)
|
0.135 (0.047)
|
−0.200 (0.055)
|
0.499 (0.083)
|
|
CPV (%)
|
2.92
|
0.82
|
1.42
|
2.50
|
|
EW40
|
beta (SE)
|
−0.269 (0.051)
|
0.167 (0.046)
|
−0.204 (0.054)
|
0.567 (0.081)
|
|
CPV (%)
|
3.45
|
1.49
|
1.68
|
3.51
|
|
EW44
|
beta (SE)
|
−0.283 (0.053)
|
0.189 (0.047)
|
−0.195 (0.056)
|
0.503 (0.085)
|
|
CPV (%)
|
3.62
|
1.73
|
1.39
|
2.74
|
|
EW48
|
beta (SE)
|
−0.266 (0.057)
|
0.270 (0.051)
|
−0.190 (0.061)
|
0.455 (0.092)
|
|
CPV (%)
|
3.00
|
3.43
|
1.22
|
2.03
|
|
EW52
|
beta (SE)
|
−0.303 (0.056)
|
0.258 (0.050)
|
−0.277 (0.060)
|
0.549 (0.092)
|
|
CPV (%)
|
4.02
|
3.13
|
2.65
|
3.09
|
|
EW56
|
beta (SE)
|
−0.283 (0.054)
|
0.271 (0.048)
|
−0.317 (0.057)
|
0.453 (0.087)
|
|
CPV (%)
|
3.63
|
3.54
|
3.38
|
2.12
|
|
EW60
|
beta (SE)
|
−0.286 (0.053)
|
0.241 (0.048)
|
−0.272 (0.057)
|
0.469 (0.085)
|
|
CPV (%)
|
3.81
|
2.89
|
2.53
|
2.31
|
-
EA effect allele (minor allele), AA alternative allele (major allele), EAF effect allele frequency, FEW first egg weight, EW32, EW36, EW40, EW44, EW48, EW52, EW56, EW60 egg weight per four weeks from 32 to 60 week of age
-
aAlleles are indexed to the forward strand of Galgal4 assembly
-
bEstimated allelic substitution effect per copy of the effect allele (EA) based on inverse-normal transformed scale under an additive model, expressed in SD unit/allele; SE = standard error of the beta
-
cCPV = contribution to phenotypic variance (%)
