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Table 1 Quality evaluation of restriction-site associated DNA sequencing data in 318 hybrid seedlings and their parents

From: A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Restriction enzyme

Plant materials

Total reads (M)

Total bases (Gb)

GC (%)

Q20 (%)

Coverage (×)

EcoRI

Jonathan

17.12

1.58

37.33

97.04

~2.13

Golden Delicious

19.04

1.80

37.15

96.95

~2.43

Progeny

3972.27

371.66

39.70

96.16

~1.57

HindIII

Jonathan

22.33

2.10

39.32

96.78

~2.83

Golden Delicious

18.77

1.76

39.26

96.79

~2.38

Progeny

3164.47

296.27

39.37

96.86

~1.26

  1. Data of progeny were collected from all 318 individuals derived from ‘Jonathan’ × ‘Golden Delicious’. The size of apple whole genome referenced the estimated genome size 742.3 Mb by Velasco et al. [4]
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BMC Genomics

ISSN: 1471-2164

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