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Table 1 Quality evaluation of restriction-site associated DNA sequencing data in 318 hybrid seedlings and their parents

From: A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

Restriction enzyme Plant materials Total reads (M) Total bases (Gb) GC (%) Q20 (%) Coverage (×)
EcoRI Jonathan 17.12 1.58 37.33 97.04 ~2.13
Golden Delicious 19.04 1.80 37.15 96.95 ~2.43
Progeny 3972.27 371.66 39.70 96.16 ~1.57
HindIII Jonathan 22.33 2.10 39.32 96.78 ~2.83
Golden Delicious 18.77 1.76 39.26 96.79 ~2.38
Progeny 3164.47 296.27 39.37 96.86 ~1.26
  1. Data of progeny were collected from all 318 individuals derived from ‘Jonathan’ × ‘Golden Delicious’. The size of apple whole genome referenced the estimated genome size 742.3 Mb by Velasco et al. [4]