Table 4 Unigenes matching records in selected databases. The repeat-filtered assembly was utilized for EquCab2 alignment-based annotation
From: Generation of a de novo transcriptome from equine lamellar tissue
Database | Total Records | Unigenes |
|---|---|---|
NCBI NR Protein | 37,818,139 | 36,195 / 74,860a (48 %) |
Equine-Specific Repeats | 2,905,169 | 19,740 / 74,860a (26 %) |
Non-Horse RefSeq | 255,606 | 24,501 / 55,120b (44 %) |
Ensembl Predictions | 29,196 | 15,538 / 55,120b (28 %) |
Horse RefSeq | 1,169 | 604 / 55,120b (1 %) |
None | n/a | 31,091 / 74,860a (42 %) |