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Table 4 Unigenes matching records in selected databases. The repeat-filtered assembly was utilized for EquCab2 alignment-based annotation

From: Generation of a de novo transcriptome from equine lamellar tissue

Database Total Records Unigenes
NCBI NR Protein 37,818,139 36,195 / 74,860a (48 %)
Equine-Specific Repeats 2,905,169 19,740 / 74,860a (26 %)
Non-Horse RefSeq 255,606 24,501 / 55,120b (44 %)
Ensembl Predictions 29,196 15,538 / 55,120b (28 %)
Horse RefSeq 1,169 604 / 55,120b (1 %)
None n/a 31,091 / 74,860a (42 %)
  1. aUnfiltered transcriptome assembly
  2. bRepeat-filtered transcriptome assembly