Table 5 Putative novel loci validated by RT-PCR
From: Generation of a de novo transcriptome from equine lamellar tissue
Name | Chr | Start | End | ORF length | Exons | E | BLASTX |
|---|---|---|---|---|---|---|---|
UN20159 | 1 | 160767946 | 160771835 | 85 | 4 | 1.2E-40 | AAA80518 T-cell receptor alpha chain (IgC TCRA) [Equus caballus] |
UN14299 | 4 | 24422341 | 24427035 | 83 | 4 | none | none |
UN30143 | 5 | 15325547 | 15363449 | 515 | 16 | 7.3E-22 | XP_003209297 PREDICTED: intraflagellar transport protein 80 homolog [Meleagris gallopavo] |
UN27297 | 5 | 74952780 | 74965671 | 177 | 6 | 1.7E-56 | XP_001493637 PREDICTED: guanylate-binding protein 5 [Equus caballus] |
UN27113 | 9 | 81709438 | 81711119 | 137 | 4 | 2.9E-60 | XP_001917082 PREDICTED: lymphocyte antigen 6H-like [Equus caballus] |
UN28086 | 11 | 880333 | 894532 | 240 | 6 | 9.9E-31 | NP_663348 secreted and transmembrane protein 1A precursor [Mus musculus] |
UN62514 | 11 | 37045433 | 37058857 | 162 | 5 | 1.5E-11 | ACI67873163 Perlwapin [Salmo salar] |
UN21936 | 12 | 19828520 | 19834360 | 195 | 5 | 2.1E-14 | NP_001243909 placenta-specific protein 1 precursor [Equus caballus] |
UN70945 | 22 | 34309639 | 34312469 | 141 | 4 | 1.7E-54 | AES10462 antileukoproteinase-like protein [Mustela putorius furo] |
UN26965 | 24 | 44802220 | 44806274 | 142 | 5 | 3.5E-21 | XP_002696828 PREDICTED: uncharacterized protein LOC509029 [Bos taurus] |
UN26584 | 28 | 21567866 | 21620053 | 248 | 7 | 5.8E-102 | XP_003952339 PREDICTED: uncharacterized protein LOC101059192 [Pan troglodytes] |
UN50658 | X | 2231083 | 2240297 | 174 | 7 | 1.0E-38 | XP_003134963 PREDICTED: odorant-binding protein-like [Sus scrofa] |