Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

BMC Genomics

Table 1 List of bacterial genera highlighting the number of strains that have been associated with the pathogenic state, as well as the strains associated with the commensal state in the present study

Total bacterial strain genomes					2527
Total pathogenic bacterial strains					949
KEGG based pathogenic strains					767
Additional literature based pathogenic strains					182
Genus	Total	Pathogenic	Genus	Total	Pathogenic
Streptococcus^a	120	77	Rickettsia^a	41	19
Chlamydia^a	98	81	Burkholderia^a	39	17
Bacillus^a	81	22	Listeria^a	34	25
Candidatus^a	71	4	Campylobacter^a	26	13
Mycobacterium^a	65	34	Vibrio	25	20
Mycoplasma^a	65	54	Brucella	20	18
Escherichia^a	64	39	Acinetobacter	19	12
Helicobacter^a	63	47	Francisella	19	13
Pseudomonas^a	53	12	Yersinia	19	17
Staphylococcus^a	51	42	Borrelia	18	14
Corynebacterium^a	50	34	Neisseria	18	18
Clostridium^a	49	22	Treponema	17	13
Salmonella^a	45	36	Haemophilus	16	13

The “^a” identifies those genera for which we have also conducted within genus comparisons