Fig. 6

a Alignment of exon 1 sequences from lncRNAs, translocation breakpoint flanking sequence and the 10,000 bp unit. Nucleotide sequences of RNA exon 1 samples taken from transcript numbers shown on the Vega/Sanger website: http://vega.sanger.ac.uk/ or the Ensembl site: http://useast.ensembl.org/. The segment of the 10,000 bp unit chosen for the exon sequence alignment (positions 3993–4204) is from a previous breakpoint insert in this region. This exon sequence aligns in the reverse complement in the 10,000 bp unit. b Percent identities. Sequence alignment and percent identities is by Clustal W2 (www.ebi.ac.uk/Tools/msa/clustalw2/)