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Table 2 Bifidobacterium longum variable regions that are indicated by their respective locus tags

From: Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems

Variable region B. longum subsp. longum NCIMB 8809 B. longum subsp. longum CCUG 30698 B. longum subsp. longum NCC2705 B. longum subsp. longum DJO10A
Prophage 1a B8809_1609 – B8809_1668 - - -
Prophage 1b - BBL306_1148_ BBL306_1177 - -
Prophage 1c - - - BLD_1131 – BLD1161*
Prophage 1d - - BL0367 – BL0386 -
Episome 1a B8809_0936 – B8809_1001 - - -
Episome 1b - - BL1458 – BL1495 -
Episome 1c - - - BLD_0337 – BLD_0395
CRISPR - - - BLD_1903 – BLD1904
EPS cluster 1a B8809_0330 – B8809_0356 - - -
EPS cluster 1b - BBL306_0398 – BBL306_0424 - -
EPS cluster 1c - - BL0225 – BL0237 -
EPS cluster 1d - - - BLD_1565 – BLD_1579
EPS cluster 2a B8809_1724 – B8809_1741 - - -
EPS cluster 2b - BBL306_1452 – BBL306_1466 - -
EPS cluster 2c - - BL0203 – BL0215 -
EPS cluster 2d - - - BLD_1565 – BLD_1579
R/M system 1 B8809_0606 – B8809_0607* - BL1473 – BL1474* -
R/M system 2 B8809_0958 - - -
R/M system 3 B8809_1350 – B8809_1355* BBL306_1749 – BBL306_1756 * BL1778 – BL1785* BLD_1954 – BLD_1962*
R/M system 4   BBL306_1025   
R/M system 5 - BBL306_0230 – BBL306_0231 - -
R/M system 6 - BBL306_0910 – BBL306_0911 - -
R/M system 7 - - BL0563 – BL0565 -
R/M system 8 - - - BLD_1565 – BLD_1579
pil (Sortase dependent) B8809_1829 – B8809_1831* BBL306_1003 – BBL306_1005* BL0674 – BL0676-* BLD_1467 – BLD_1469*
pil B8809_1607 – B8809_1608* BBL306_1519 – BBL306_1520* - -
pil (Tad) B8809_0107 – B8809_0112 and B8809_0717* BBL306_0121 – BBL306_0126 and BBL306_0758* BL0504 – BL0509 and BL0879* BLD_0613 and BLD_1293 - BLD_1298*
  1. Homologous genes are indicated within the table and are marked with a "*".