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Table 2 Bifidobacterium longum variable regions that are indicated by their respective locus tags

From: Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems

Variable region

B. longum subsp. longum NCIMB 8809

B. longum subsp. longum CCUG 30698

B. longum subsp. longum NCC2705

B. longum subsp. longum DJO10A

Prophage 1a

B8809_1609 – B8809_1668

-

-

-

Prophage 1b

-

BBL306_1148_ BBL306_1177

-

-

Prophage 1c

-

-

-

BLD_1131 – BLD1161*

Prophage 1d

-

-

BL0367 – BL0386

-

Episome 1a

B8809_0936 – B8809_1001

-

-

-

Episome 1b

-

-

BL1458 – BL1495

-

Episome 1c

-

-

-

BLD_0337 – BLD_0395

CRISPR

-

-

-

BLD_1903 – BLD1904

EPS cluster 1a

B8809_0330 – B8809_0356

-

-

-

EPS cluster 1b

-

BBL306_0398 – BBL306_0424

-

-

EPS cluster 1c

-

-

BL0225 – BL0237

-

EPS cluster 1d

-

-

-

BLD_1565 – BLD_1579

EPS cluster 2a

B8809_1724 – B8809_1741

-

-

-

EPS cluster 2b

-

BBL306_1452 – BBL306_1466

-

-

EPS cluster 2c

-

-

BL0203 – BL0215

-

EPS cluster 2d

-

-

-

BLD_1565 – BLD_1579

R/M system 1

B8809_0606 – B8809_0607*

-

BL1473 – BL1474*

-

R/M system 2

B8809_0958

-

-

-

R/M system 3

B8809_1350 – B8809_1355*

BBL306_1749 – BBL306_1756 *

BL1778 – BL1785*

BLD_1954 – BLD_1962*

R/M system 4

 

BBL306_1025

  

R/M system 5

-

BBL306_0230 – BBL306_0231

-

-

R/M system 6

-

BBL306_0910 – BBL306_0911

-

-

R/M system 7

-

-

BL0563 – BL0565

-

R/M system 8

-

-

-

BLD_1565 – BLD_1579

pil (Sortase dependent)

B8809_1829 – B8809_1831*

BBL306_1003 – BBL306_1005*

BL0674 – BL0676-*

BLD_1467 – BLD_1469*

pil

B8809_1607 – B8809_1608*

BBL306_1519 – BBL306_1520*

-

-

pil (Tad)

B8809_0107 – B8809_0112 and B8809_0717*

BBL306_0121 – BBL306_0126 and BBL306_0758*

BL0504 – BL0509 and BL0879*

BLD_0613 and BLD_1293 - BLD_1298*

  1. Homologous genes are indicated within the table and are marked with a "*".