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Table 3 Presence or absence of LNB/GNB, sialic acid and HMO gene clusters in all B. longum genomes

From: Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems

  LNB/GNB Sialic acid HMO cluster Total number of GHs GHs active against plant polysaccharide Arabinose/Xylose metabolism
B. longum subsp. infantis ATCC 15697 + + + 25 2 −
B. longum subsp. infantis EK3 + + + 26 2 + (Xylose only)
B. longum subsp. suis LMG 21814 + + (with the exception of nanH) − 32 5 +
B. longum subsp. suis DSM 20211 + + (with the exception of nanH) − 35 8 +
B. longum AGR2137 + − − 38 7 +
B. longum subsp. longum 72B + − − 37 7 +
B. longum subsp. longum EK5 + − − 34 8 +
B. longum subsp. longum GT15 + − − 36 9 +
B. longum subsp. longum JDM301 + − BLJ_0318 – BLJ_0322 37 9 +
B. longum subsp. longum KACC91563 + − − 39 9 +
B. longum subsp. longum BXY01 + − BXY01_0319 – BXY01_0323 37 10 +
B. longum subsp. longum CMCCP0001 + − CMCCP0001_1673 – CMCCP0001_1677 38 10 +
B. longum subsp. infantis 157 F + − − 41 10 +
B. longum subsp. longum BBMN68 + − − 38 10 +
B. longum subsp. longum 171B + − − 43 11 +
B. longum subsp. longum E18 + − − 37 11 +
B. longum subsp. longum F8 + − − 43 11 +
B. longum subsp. longum NCIMB 8809 + − − 38 13 +
B. longum subsp. longum D2957 + − − 39 12 +
B. longum subsp. longum EK13 + − − 39 12 +
B. longum subsp. longum JCM 1217 + − − 38 12 +
B. longum subsp. longum LMG 13197 + − − 37 13 +
B. longum subsp. longum NCC2705 + − − 33 13 +
B. longum subsp. longum 15B + − − 39 15 +
B. longum subsp. longum DJO10A + − − 45 16 +
B. longum subsp. infantis CCUG 52486 + − − 43 17 +
B. longum subsp. longum ATCC 55813 + − − 48 17 +
B. longum subsp. longum CCUG 30698 + − − 45 18 +
B. longum subsp. longum 16B + − − 50 19 +
B. longum subsp. longum 22B + − − 50 19 +
B. longum subsp. longum 35B + − − 50 19 +
B. longum subsp. longum 44B + − − 50 19 +
B. longum subsp. longum 71B + − − 50 19 +
  1. The + symbol indicates the presence of an entire cluster and the − symbol indicates the absence of an entire cluster
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BMC Genomics

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