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Table 1 Summary of the crowdsourced data with its metadata. The dataset includes a total of 27 files and 18,463 MB of data

From: Crowdsourced direct-to-consumer genomic analysis of a family quartet

Type Provider Source Platform Format Year obtained # files Individuals(s) Approx. size (MB)
Genotype 23andMe Saliva SNP chip v2 bed.zip 2009 1 Son 5
Genotype 23andMe Saliva SNP chip v3 bed.zip 2011 1 Mother 8
Genotype 23andMe Saliva SNP chip v3 bed.zip 2011 1 Father 8
Genotype 23andMe Saliva SNP chip v3 bed.zip 2011 1 Daughter 8
Genotype 23andMe Saliva SNP chip v3 bed.zip 2011 1 Aunt 8
Annotation SNPedia SNP chip v2 Phenotypes txt 2012 1 Son 0.3
Annotation SNPedia SNP chip v3 Phenotypes txt 2012 1 Mother 0.4
Annotation SNPedia SNP chip v3 Phenotypes txt 2012 1 Father 0.4
Annotation SNPedia SNP chip v3 Phenotypes txt 2012 1 Daughter 0.4
Annotation SNPedia SNP chip v3 Phenotypes txt 2012 1 Aunt 0.4
Whole Exome Sequencing BGI Saliva SE Illumina HiSeq 2000 fastq.gz 2011 4 Son 2400
Whole Exome Sequencing BGI Saliva PE Illumina HiSeq 2000 fastq.gz 2013 2 Mother 2000
Whole Exome Sequencing BGI Saliva PE Illumina HiSeq 2000 fastq.gz 2013 2 Father 2000
Whole Exome Sequencing BGI Saliva PE Illumina HiSeq 2000 fastq.gz 2013 2 Sister 2400
Alignment InSilicoDB SE Illumina HiSeq 2000 BWA bam 2013 1 Son 2900
Alignment InSilicoDB PE Illumina HiSeq 2000 BWA bam 2013 1 Mother 1800
Alignment InSilicoDB PE Illumina HiSeq 2000 BWA bam 2013 1 Father 1600
Alignment InSilicoDB PE Illumina HiSeq 2000 BWA bam 2013 1 Daughter 2200
Annotation InSilicoDB Bam from Son, Mother, Father, Daughter GATK VCF 2013 1 Son, Mother, Father, Daughter 124.6
Metagenomics BGI Fecal frozen sample PE Illumina HiSeq 2000 fastq.gz 2013 2 Son 1000
Total       27   18463.5