Crowdsourced direct-to-consumer genomic analysis of a family quartet

BMC Genomics

Table 1 Summary of the crowdsourced data with its metadata. The dataset includes a total of 27 files and 18,463 MB of data

Type	Provider	Source	Platform	Format	Year obtained	# files	Individuals(s)	Approx. size (MB)
Genotype	23andMe	Saliva	SNP chip v2	bed.zip	2009	1	Son	5
Genotype	23andMe	Saliva	SNP chip v3	bed.zip	2011	1	Mother	8
Genotype	23andMe	Saliva	SNP chip v3	bed.zip	2011	1	Father	8
Genotype	23andMe	Saliva	SNP chip v3	bed.zip	2011	1	Daughter	8
Genotype	23andMe	Saliva	SNP chip v3	bed.zip	2011	1	Aunt	8
Annotation	SNPedia	SNP chip v2	Phenotypes	txt	2012	1	Son	0.3
Annotation	SNPedia	SNP chip v3	Phenotypes	txt	2012	1	Mother	0.4
Annotation	SNPedia	SNP chip v3	Phenotypes	txt	2012	1	Father	0.4
Annotation	SNPedia	SNP chip v3	Phenotypes	txt	2012	1	Daughter	0.4
Annotation	SNPedia	SNP chip v3	Phenotypes	txt	2012	1	Aunt	0.4
Whole Exome Sequencing	BGI	Saliva	SE Illumina HiSeq 2000	fastq.gz	2011	4	Son	2400
Whole Exome Sequencing	BGI	Saliva	PE Illumina HiSeq 2000	fastq.gz	2013	2	Mother	2000
Whole Exome Sequencing	BGI	Saliva	PE Illumina HiSeq 2000	fastq.gz	2013	2	Father	2000
Whole Exome Sequencing	BGI	Saliva	PE Illumina HiSeq 2000	fastq.gz	2013	2	Sister	2400
Alignment	InSilicoDB	SE Illumina HiSeq 2000	BWA	bam	2013	1	Son	2900
Alignment	InSilicoDB	PE Illumina HiSeq 2000	BWA	bam	2013	1	Mother	1800
Alignment	InSilicoDB	PE Illumina HiSeq 2000	BWA	bam	2013	1	Father	1600
Alignment	InSilicoDB	PE Illumina HiSeq 2000	BWA	bam	2013	1	Daughter	2200
Annotation	InSilicoDB	Bam from Son, Mother, Father, Daughter	GATK	VCF	2013	1	Son, Mother, Father, Daughter	124.6
Metagenomics	BGI	Fecal frozen sample	PE Illumina HiSeq 2000	fastq.gz	2013	2	Son	1000
Total						27		18463.5

ISSN: 1471-2164