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Table 2 The SNP frequencies in SR3 and JN177

From: Asymmetric somatic hybridization induces point mutations and indels in wheat

SNPs

Type

SNPs (per 1000 nt)

  

SR3-JN177

SR3-Ta

JN177-Ta

Transitions

C → T

2.065

0.788

0.727

 

T → C

1.776

1.016

1.031

 

G → A

1.542

1.168

0.843

 

A → G

1.318

0.641

0.602

 

Total

6.701

3.613

3.203

Transversions

A → T

0.267

0.154

0.139

 

T → A

0.252

0.208

0.180

 

C → G

1.142

0.399

0.412

 

G → C

1.084

0.680

0.671

 

G → T

0.455

0.320

0.297

 

T → G

0.386

0.273

0.281

 

A → C

0.507

0.243

0.239

 

C → A

0.533

0.349

0.342

 

Total

4.627

2.625

2.561

Total SNPs

 

11.328

6.238

5.764

  1. SR3-JN177: JN177 unigene sequences queried with those of SR3. SR3-Ta: SR3 unigene sequences queried with wheat ESTs housed in GenBank. JN177-Ta: JN177 unigene sequences queried with wheat ESTs housed in GenBank
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BMC Genomics

ISSN: 1471-2164

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