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Table 4 Indel variation in SR3 and JN177 unigene sequences

From: Asymmetric somatic hybridization induces point mutations and indels in wheat

Sizes Type SR3-177 (%) SR3-TA (%) 177-Ta (%)
Small indels Insertion 51.57 58.02 37.66
(1–10 nt) Deletion 30.57 17.02 14.57
  Indel 82.14 75.04 52.23
Large indels Insertion 3.45 1.75 1.32
(23–574 nt) Deletion 3.25 9.8 8.94
  Indel 6.70 11.55 10.26
  1. “Small” indels were defined as those lying within an aligned sequence, while “large” indels split matched sequence into two separate alignments. The table shows the percentage of unigenes affected by insertion/deletions. SR3-JN177: JN177 unigene sequences queried with those of SR3. SR3-Ta: SR3 unigene sequences queried with wheat ESTs housed in GenBank. JN177-Ta: JN177 unigene sequences queried with wheat ESTs housed in GenBank
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BMC Genomics

ISSN: 1471-2164

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