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Table 1 Positive Predictive Value (PPV) and Sensitivity of Jitterbug and RetroSeq predictions in Arabidopsis thaliana semi-simulated dataset (simulated reference, real reads). In the case of RetroSeq, basepair resolution loci were extended and merged, then filtered according to the criteria recommended by the authors. For Jitterbug, the filtering was according to generated default parameters (Additional file 2: Figure S2, Methods)

From: Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution

  

PPV (%)

Sensitivity (%)

Jitterbug

raw

37.16

89.72

 

filtered

92.7

85.05

RetroSeq

extended +/- 100 bp and merged

61.01

90.26

 

extended, merged and filtered

87.31

88.21