Table 2 A) Summary of insertion sites independently validated with PacBio long reads for predictions generated by Jitterbug and RetroSeq. B) Comparison of validated TEI loci predicted by Jitterbug and RetroSeq
From: Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution
Jitterbug | RetroSeq | |
Total predicted insertions (filtered) | 203 | 622 |
locus aligns to PacBio | 195 (96 % total) | 493 (79 % total) |
alignment shows insertion > 200bp | 190 (93 % total) | 160 (25 % total) |
inserted sequence is TE | 180 (88 % total) | 132 (21 % total) |
confirmed insertions | ||
Jitterbug (180) | RetroSeq (132) | |
locus nested in TE | 0 | 90 |
unique to the method | 146 | 98 |
common to the two | 34 | |