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Table 7 Percentage of truly somatic (S) and germline (G) insertions, among the insertions predicted in the TD but not the ND sample, eliminated according to various cutoff values. The cutoff corresponds to the percentage of discordant reads in a 400bp window around the TEI and is used to determine the presence of a FN in the ND sample

From: Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution

    % predictions eliminated   
  10X 20X 40X
Discordant read cutoff S G S G S G
> 1% 0.00 97.73 6.15 98.17 1.54 100.00
> 1.5% 0.00 95.45 4.62 95.41 0.00 100.00
> 2% 0.00 90.91 0.00 94.50 0.00 100.00
> 2.5% 0.00 83.33 0.00 86.24 0.00 100.00
> 3% 0.00 79.55 0.00 81.65 0.00 93.94